Plasmid NZ_CP006642.1

Sequence

Nucleotide Information

Accession	NZ_CP006642.1
Description	Escherichia coli PCN061 plasmid PCN061p6, complete sequence
Source	refseq
Topology	circular
Length	145722 bp
GC Content	0.51 %
Created at NCBI	June 22, 2015

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli PCN061 (1358422)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain	Escherichia_coli_PCN061 (1358422)

Assembly

Genome Data Information

Accession	GCF_001029125.1
Assembly Coverage	33

Biosample

Curated Collection Information

Accession	3765122

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP006642.1	See Comparison

Plasmid Visualization

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Greens

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Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

rgi	dfrA17		copy
rgi	aadA5		copy
amrfinderplus	oqxA		copy
amrfinderplus	oqxB		copy
amrfinderplus	silA		copy
amrfinderplus	silC		copy
amrfinderplus	silF		copy
amrfinderplus	silB		copy
amrfinderplus	aac(3)-IId		copy
amrfinderplus	silS		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 145 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000107__CP014778_00094	IncFIB	1	1011	plus	90.208	100	0	1319
replicon	000155__CP018649	IncN	11972	12653	minus	100	95	0	1260
replicon	000215__KC853434_00019	IncX1	70130	70576	plus	98.434	100	0	787
relaxase	NC_014725_00039	MOBC	134433	135176	plus	100	100	9.18e-164	508
mate-pair-formation	NC_011092_00100	MPF_T	122737	123741	plus	100	100	1.31e-166	521
mate-pair-formation	NC_011092_00102	MPF_T	123954	124637	plus	100	100	3.09e-132	417
mate-pair-formation	NC_011092_00103	MPF_T	124633	125523	plus	100	100	0	575
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 7 of 7 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2