Plasmid NZ_AP027669.1

Sequence

Nucleotide Information

Accession NZ_AP027669.1
Description Escherichia coli strain PSS-04 plasmid pPSS-04_3, complete sequence
Source refseq
Topology circular
Length 45537 bp
GC Content 0.47 %
Created at NCBI April 4, 2024



Assembly

Genome Data Information

Accession GCF_036500705.1
Assembly Coverage 150


Biosample

Curated Collection Information
Accession 38124449

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Ecuador,Puyo
Original Query Type name
Coordinates (Lat/Lon) -1.49/-78.00
Address Ecuador,Puyo

ECOSYSTEM
Original Query Homo sapiens,whole organism,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGtype IV secretory system conjugative DNA transfer family proteincopy
PGAGtype IV secretory system conjugative DNA transfer family proteincopy
PGAGtraIcopy
PGAGtraJcopy
PGAGTraK family proteincopy
PGAGconjugal transfer protein TraLcopy
PGAGprotein traMcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGIncP plasmid survival protein KfrC family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 62 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000161__KX377410_00057IncP1695017828minus10010001624
relaxaseNC_022650_00002MOBP13794009minus97.60510001731
mate-pair-formationNC_023907_00079MPF_T21237minus100990806
mate-pair-formationNC_023907_00043MPF_T2058623126plus95.86810001669
mate-pair-formationNC_023907_00045MPF_T2391224736plus98.545931.99e-179555
mate-pair-formationNC_023907_00079MPF_T4483145535minus99.574991.2e-150489
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 6 of 6 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2