Plasmid NZ_AP027596.1

Sequence

Nucleotide Information

Accession NZ_AP027596.1
Description Escherichia coli strain LR-64-2 plasmid pLR-64-2_1, complete sequence
Source refseq
Topology circular
Length 94667 bp
GC Content 0.52 %
Created at NCBI April 4, 2024



Assembly

Genome Data Information

Accession GCF_036498285.1
Assembly Coverage 318


Biosample

Curated Collection Information
Accession 38124465

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Ecuador,Santo Domingo
Original Query Type name
Coordinates (Lat/Lon) -0.34/-79.17
Address Ecuador,Santo Domingo

ECOSYSTEM
Original Query Homo sapiens,whole organism,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusfosAcopy
amrfinderplusmcr-1.1copy
rgiFosA6copy
PGAGrepAcopy
PGAGyacAcopy
PGAGyacBcopy
PGAGDUF6404 family proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAGIS1-like element IS1A family transposasecopy
PGAGfrmRcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 118 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP015086MOBF5877359242plus89.54852.26e-166592
relaxaseNC_017627_00068MOBF8500290269plus98.17810003365
replicon000136__AP014877_00014IncFIA1858plus97.90210001485
repliconCP003035IncFIC9441294667minus100993.77e-131473
mate-pair-formationNC_022651_00077MPF_F6129861606plus99.029998.49e-63212
mate-pair-formationNC_010409_00124MPF_F6218462909plus97.9341002.34e-155484
mate-pair-formationNC_019094_00090MPF_F6291264306plus96.137960813
mate-pair-formationNC_017639_00094MPF_F6522365735plus95.3221001.55e-95309
mate-pair-formationNC_013437_00116MPF_T6737169986plus91.0559901641
mate-pair-formationNC_007675_00027MPF_F7037271001plus99.524977.55e-136427
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2