Plasmid NZ_AP027591.1

Sequence

Nucleotide Information

Accession NZ_AP027591.1
Description Escherichia coli strain LR-64-1 plasmid pLR-64-1_3, complete sequence
Source refseq
Topology circular
Length 45882 bp
GC Content 0.45 %
Created at NCBI April 4, 2024



Assembly

Genome Data Information

Accession GCF_036498065.1
Assembly Coverage 294


Biosample

Curated Collection Information
Accession 38124443

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Ecuador,Santo Domingo
Original Query Type name
Coordinates (Lat/Lon) -0.34/-79.17
Address Ecuador,Santo Domingo

ECOSYSTEM
Original Query Homo sapiens,whole organism,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussul3copy
amrfinderplusblaTEM-176copy
amrfinderplusaadA1copy
amrfinderplusaph(3')-Iacopy
rgiaadAcopy
rgimef(B)copy
amrfinderplusqacLcopy
PGAGddp1copy
PGAGhypothetical proteincopy
PGAGRepB family plasmid replication initiator proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 64 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000215__KC853434_00019IncX1547993minus98.4341000787
relaxaseNC_019047_00022MOBP66297783plus1001000726
mate-pair-formationNC_023277_00163MPF_T1040512549plus82.7979901241
mate-pair-formationNC_019047_00030MPF_T1358514637plus1001000585
mate-pair-formationNC_019047_00031MPF_T1487815549plus100935.5799999999999995e-136428
mate-pair-formationNC_019047_00032MPF_T1555816484plus1001000631
mate-pair-formationNC_019047_00035MPF_T1875820554plus1009801116
mate-pair-formationNC_016976_00061MPF_T3148231943plus88.4621001e-78276
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 8 of 8 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2