Plasmid NZ_AP027213.1

Sequence

Nucleotide Information

Accession NZ_AP027213.1
Description Escherichia coli strain JNE131328 plasmid pJNE131328-1, complete sequence
Source refseq
Topology circular
Length 160700 bp
GC Content 0.49 %
Created at NCBI June 24, 2023



Assembly

Genome Data Information

Accession GCF_030295525.1
Assembly Coverage 162.5


Biosample

Curated Collection Information
Accession 35534937

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussubAcopy
amrfinderplussubBcopy
amrfinderplusepeAcopy
amrfinderplusehxAcopy
amrfinderplusespPcopy
amrfinderplusihacopy
amrfinderplussaacopy
PGAGRepB family plasmid replication initiator proteincopy
PGAGhypothetical proteincopy
PGAGMarR family transcriptional regulatorcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 151 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAB290882MOBP122583122676minus100941.35e-41174
replicon000095__NZ_CP014273_00094IncFIB1978plus97.85310001690
repliconCP013193IncI-gamma/K15721058241minus93.99210001563
relaxaseNC_013728_00087MOBP119530122238minus90.61810001634
mate-pair-formationNC_022992_00102MPF_I7904579878plus1001002e-175543
mate-pair-formationNC_022992_00098MPF_I8539785744plus1001009.01e-51178
mate-pair-formationNC_012487_00131MPF_I8575986448plus91.304994.3299999999999996e-138434
mate-pair-formationNC_022371_00084MPF_I8646587436plus91.6671001.56e-178554
mate-pair-formationNC_007365_00033MPF_I8877189481plus1001006.16e-156485
mate-pair-formationNC_011754_00109MPF_I8948190008plus91.4771001.4e-86283
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2