Plasmid NZ_AP023341.1

Sequence

Nucleotide Information

Accession NZ_AP023341.1
Description Klebsiella pneumoniae strain MH15-269M plasmid pMH15-269M_4, complete sequence
Source refseq
Topology circular
Length 71220 bp
GC Content 0.52 %
Created at NCBI Sept. 26, 2020



Assembly

Genome Data Information

Accession GCF_011764365.2
Assembly Coverage 168


Biosample

Curated Collection Information
Accession 14401626

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 21.0277N;105.8341E
Original Query Type coordinates
Coordinates (Lat/Lon) 21.03/105.83
Address Ton Duc Thang Street, Phường Quốc Tử Giám, Dong Da District, Hà Nội, 10081, Vietnam

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP033629.1 See Comparison
OZ026790.1 See Comparison
OZ026788.1 See Comparison
OZ026784.1 See Comparison
OZ026783.1 See Comparison
OZ026780.1 See Comparison
OZ026777.1 See Comparison
OZ026775.1 See Comparison
OZ026772.1 See Comparison
OZ026769.1 See Comparison
OZ026766.1 See Comparison
NZ_KJ201887.1 See Comparison
NZ_AP023341.1 See Comparison
OZ026790.1 See Comparison
NZ_CP098194.1 See Comparison
NC_019424.1 See Comparison
NC_019090.1 See Comparison
NZ_CP033629.1 See Comparison
OZ026788.1 See Comparison
OZ026784.1 See Comparison
OZ026783.1 See Comparison
OZ026780.1 See Comparison
OZ026777.1 See Comparison
OZ026775.1 See Comparison
OZ026772.1 See Comparison
OZ026769.1 See Comparison
OZ026766.1 See Comparison
NZ_CP033629.1 See Comparison
NZ_CP098194.1 See Comparison
NC_019424.1 See Comparison
NZ_KJ201887.1 See Comparison
NC_019090.1 See Comparison
OZ026790.1 See Comparison
OZ026788.1 See Comparison
OZ026784.1 See Comparison
OZ026783.1 See Comparison
OZ026780.1 See Comparison
OZ026777.1 See Comparison
OZ026775.1 See Comparison
OZ026772.1 See Comparison
OZ026769.1 See Comparison
OZ026766.1 See Comparison
NZ_KJ201887.1 See Comparison
NC_019090.1 See Comparison
NZ_CP098194.1 See Comparison
NC_019424.1 See Comparison
NZ_CP033629.1 See Comparison
OZ026790.1 See Comparison
OZ026788.1 See Comparison
OZ026784.1 See Comparison
OZ026783.1 See Comparison
OZ026780.1 See Comparison
OZ026777.1 See Comparison
OZ026775.1 See Comparison
OZ026772.1 See Comparison
OZ026769.1 See Comparison
OZ026766.1 See Comparison
NZ_KJ201887.1 See Comparison
NZ_CP098194.1 See Comparison
OZ026790.1 See Comparison
NC_019090.1 See Comparison
NC_019424.1 See Comparison
NZ_CP033629.1 See Comparison
OZ026788.1 See Comparison
OZ026784.1 See Comparison
OZ026783.1 See Comparison
OZ026780.1 See Comparison
OZ026777.1 See Comparison
OZ026775.1 See Comparison
OZ026772.1 See Comparison
OZ026769.1 See Comparison
OZ026766.1 See Comparison
NZ_KJ201887.1 See Comparison
NC_019424.1 See Comparison
NZ_CP098194.1 See Comparison
NC_019090.1 See Comparison
OZ026790.1 See Comparison
NZ_CP033629.1 See Comparison
OZ026788.1 See Comparison
OZ026784.1 See Comparison
OZ026783.1 See Comparison
OZ026780.1 See Comparison
OZ026777.1 See Comparison
OZ026775.1 See Comparison
OZ026772.1 See Comparison
OZ026769.1 See Comparison
OZ026766.1 See Comparison
NZ_KJ201887.1 See Comparison
NC_019424.1 See Comparison
NZ_CP098194.1 See Comparison
NC_019090.1 See Comparison
OZ026790.1 See Comparison
NZ_CP033629.1 See Comparison
OZ026788.1 See Comparison
OZ026784.1 See Comparison
OZ026783.1 See Comparison
OZ026780.1 See Comparison
OZ026777.1 See Comparison
OZ026775.1 See Comparison
OZ026772.1 See Comparison
OZ026769.1 See Comparison
OZ026766.1 See Comparison
NZ_KJ201887.1 See Comparison
NC_019090.1 See Comparison
NZ_CP098194.1 See Comparison
NC_019424.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2