PLSDB
v. 2024_05_31_v2
Home
Browse
Sequence Search
Statistics
Download
API
FAQ
Sequence
Host Taxonomy
Assembly
Biosample
Similar Plasmids
Visualization
Annotations
Antimicrobial Resistance Genes
Typing
Plasmid NZ_AP023238.1
Sequence
Nucleotide Information
Accession
NZ_AP023238.1
Description
Escherichia coli strain F070 plasmid pF070-NDM5, complete sequence
Source
refseq
Topology
circular
Length
93649 bp
GC Content
0.52 %
Created at NCBI
June 27, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_013374335.1
Assembly Coverage
406
Biosample
Curated Collection Information
Accession
11477717
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
16.866069N;96.195132E
Original Query Type
coordinates
Coordinates (Lat/Lon)
16.87/96.20
Address
Latha hostel, 16, Pyi Tha Ya (2) Street, Eastern District, North Dagon, Yangon East, Yangon, 11090, Myanmar
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Similar Plasmids
based on Mash distance
NZ_CP085190.1
See Comparison
NZ_CP085190.1
See Comparison
NZ_CP085190.1
See Comparison
NZ_CP085190.1
See Comparison
NZ_CP085190.1
See Comparison
NZ_AP023238.1
See Comparison
NZ_CP085190.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore