Plasmid NZ_AP023196.1

Sequence

Nucleotide Information

Accession NZ_AP023196.1
Description Escherichia coli strain TUM18530 plasmid pMTY18530-6, complete sequence
Source refseq
Topology circular
Length 2459 bp
GC Content 0.47 %
Created at NCBI June 14, 2020



Assembly

Genome Data Information

Accession GCF_013340785.1
Assembly Coverage 259


Biosample

Curated Collection Information
Accession 11866136

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGreplication initiation proteincopy
PGAGhypothetical proteincopy
PGAGRop family plasmid primer RNA-binding proteincopy
MOB-typerColRNAI_rep_cluster_1987copy
MOB-typerrep_cluster_2327copy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000019__CP000651_00005ColRNAI_rep_cluster_1987287plus98.837994.99e-35154
repliconAY033516_00007rep_cluster_232718892459plus84.014997.349999999999999e-147527
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2