Plasmid NZ_AP022395.1
Sequence
Nucleotide Information
| Accession | NZ_AP022395.1 |
|---|---|
| Description | Citrobacter portucalensis strain STW0522-27 plasmid pSTW0522-27-1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 211235 bp |
| GC Content | 0.53 % |
| Created at NCBI | Jan. 18, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Citrobacter portucalensis (1639133) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Citrobacter (544) |
| Species | Citrobacter_portucalensis (1639133) |
| Strain |
Biosample
Curated Collection Information
| Accession | 16401519 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Japan,Tokyo |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 34.70/139.40 |
| Address | Japan,Tokyo |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | merT | copy | ||
| amrfinderplus | merC | copy | ||
| amrfinderplus | arsB | copy | ||
| amrfinderplus | mph(A) | copy | ||
| amrfinderplus | aadA2 | copy | ||
| amrfinderplus | aph(6)-Id | copy | ||
| amrfinderplus | blaGES-24 | copy | ||
| amrfinderplus | blaGES-24 | copy | ||
| amrfinderplus | arsR | copy | ||
| amrfinderplus | arsA | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 264 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000092__CP025470 | IncC | 102 | 1202 | minus | 99.183 | 100 | 0 | 1984 |
| oriT | AB040037 | MOBH | 2019 | 2416 | minus | 100 | 100 | 0 | 736 |
| mate-pair-formation | NC_012885_00167 | MPF_F | 11009 | 12439 | minus | 97.484 | 100 | 0 | 931 |
| relaxase | NC_012690_00071 | MOBH | 159626 | 160267 | minus | 98.131 | 100 | 2.25e-136 | 440 |
| relaxase | NC_012885_00072 | MOBH | 166828 | 169794 | minus | 88.799 | 99 | 0 | 1597 |
| mate-pair-formation | NC_023291_00077 | MPF_F | 144596 | 145600 | minus | 99.403 | 100 | 0 | 582 |
| mate-pair-formation | NC_012885_00091 | MPF_F | 146268 | 147530 | minus | 94.076 | 100 | 0 | 821 |
| mate-pair-formation | NC_012885_00088 | MPF_T | 148355 | 150799 | minus | 98.16 | 100 | 0 | 1640 |
| mate-pair-formation | NC_016974_00085 | MPF_F | 157738 | 158313 | minus | 99.479 | 100 | 1.07e-114 | 365 |
| mate-pair-formation | NC_012885_00083 | MPF_F | 158313 | 159626 | minus | 90.411 | 100 | 0 | 752 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |