Plasmid NZ_AP022128.1

Sequence

Nucleotide Information

Accession NZ_AP022128.1
Description Enterobacter cloacae strain WP5-S18-CRE-02 plasmid pWP5-S18-CRE-02_2, complete sequence
Source refseq
Topology circular
Length 92491 bp
GC Content 0.51 %
Created at NCBI Aug. 13, 2020



Assembly

Genome Data Information

Accession GCF_014169295.1
Assembly Coverage 396


Biosample

Curated Collection Information
Accession 15592051

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 35.6538N;139.5126E
Original Query Type coordinates
Coordinates (Lat/Lon) 35.65/139.51
Address 多摩川サイクリングロード, Oshitatecho 5-chome, Fuchu, Tokyo, 206-0811, Japan

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-3copy
amrfinderplusqacEdelta1copy
amrfinderplusmph(E)copy
amrfinderplusmsr(E)copy
amrfinderplussul1copy
amrfinderplusarmAcopy
amrfinderplusaadA2copy
rgimphEcopy
amrfinderplusblaTEM-1copy
rgimsrEcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 125 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000562__KT346360_00001rep_cluster_12542258423338minus90.464810996
repliconAF550415IncL/M8993890601plus10010001227
relaxaseNC_004464_00056MOBP6523667212plus10010001380
mate-pair-formationNC_004464_00105MPF_I2789529979minus10010001415
mate-pair-formationNC_005246_00057MPF_I6776868502plus99.592952.02e-162505
mate-pair-formationNC_019063_00094MPF_I7313273641plus99.4121001.74e-108346
mate-pair-formationNC_019344_00078MPF_I7430775017plus99.5781004.9900000000000004e-130411
mate-pair-formationNC_004464_00066MPF_I7502976177plus1001000647
mate-pair-formationNC_004464_00068MPF_I7755378254plus1001004.11e-137431
mate-pair-formationNC_019154_00069MPF_I7828178808plus99.4321007.62e-100321
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2