Plasmid NZ_AP022092.1

Sequence

Nucleotide Information

Accession NZ_AP022092.1
Description Escherichia coli strain WP4-S18-ESBL-07 plasmid pWP4-S18-ESBL-07_5, complete sequence
Source refseq
Topology circular
Length 6796 bp
GC Content 0.47 %
Created at NCBI Aug. 13, 2020



Assembly

Genome Data Information

Accession GCF_014171015.1
Assembly Coverage 166


Biosample

Curated Collection Information
Accession 15592006

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 35.6514N;139.4813E
Original Query Type coordinates
Coordinates (Lat/Lon) 35.65/139.48
Address Kawasaki-kaido Ave., 大丸, Inagi, Tokyo, 206-0803, Japan

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRop family plasmid primer RNA-binding proteincopy
PGAGMobC family plasmid mobilization relaxosome proteincopy
PGAGMbeB family mobilization proteincopy
PGAGMbeD family mobilization/exclusion proteincopy
PGAGkdgTcopy
PGAGLacI family DNA-binding transcriptional regulatorcopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2350copy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 10 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNZ_CP011065MOBP671756plus87.209992.41e-1897
repliconCP035723_00002rep_cluster_2350101661minus94.1181000850
relaxaseNC_017321_00002MOBP10621409plus86.207984.09e-59202
relaxaseNC_014003_00004MOBP14052970plus89.564990877
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2