Plasmid NZ_AP021976.1
Sequence
Nucleotide Information
| Accession | NZ_AP021976.1 |
|---|---|
| Description | Klebsiella sp. WP3-W18-ESBL-02 plasmid pWP3-W18-ESBL-02_4, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 8285 bp |
| GC Content | 0.53 % |
| Created at NCBI | Aug. 13, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella sp. WP3-W18-ESBL-02 (2675710) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_sp._WP3-W18-ESBL-02 (2675710) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15591933 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 35.6684N;139.4278E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 35.67/139.43 |
| Address | 大字石田, Hino, Tokyo, 191-0021, Japan |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | Tn3-like element Tn5403 family transposase | copy | ||
| PGAG | recombinase family protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | ColRNAI_rep_cluster_1987 | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 12 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_013090_00004 | MOBP | 1574 | 2749 | minus | 92.602 | 100 | 0 | 719 |
| relaxase | CP041059_00006 | MOBP | 6413 | 6739 | minus | 96.33 | 97 | 5.27e-63 | 218 |
| oriT | CP016722 | MOB_unknown | 7161 | 7341 | minus | 89.56 | 83 | 7.43e-58 | 230 |
| replicon | CP041116_00002 | ColRNAI_rep_cluster_1987 | 7320 | 7802 | plus | 90.123 | 93 | 2.1e-176 | 625 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |