Plasmid NZ_AP019766.1
Sequence
Nucleotide Information
| Accession | NZ_AP019766.1 |
|---|---|
| Description | Escherichia coli O111:H- strain 110512 plasmid pO111-110512_5, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 6674 bp |
| GC Content | 0.50 % |
| Created at NCBI | Aug. 16, 2019 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (168927) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 12354211 |
|---|
PLASMID INFORMATION
| BIOSAMPLE_pathogenicity | stomachache, vomit, fever, watery and bloody diarrhea, and HUS |
|---|
GEOGRAPHICAL INFORMATION
| Original Query | Japan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 36.57/139.24 |
| Address | Japan |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | cda | copy | ||
| PGAG | colicin immunity domain-containing protein | copy | ||
| PGAG | colicin release lysis protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| Antismash | RiPP-like | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 13 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NZ_CP016533 | MOBP | 6506 | 6593 | plus | 97.727 | 99 | 5.34e-35 | 152 |
| replicon | CP039864_00003 | rep_cluster_2401 | 5860 | 6045 | plus | 96.774 | 98 | 2.18e-82 | 311 |
| relaxase | NC_023328_00003 | MOBP | 576 | 2171 | plus | 99.624 | 100 | 0 | 996 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |