Plasmid NZ_AP019677.1

Sequence

Nucleotide Information

Accession NZ_AP019677.1
Description Escherichia coli strain GSH8M-2 plasmid pGSH8M-2-2, complete sequence
Source refseq
Topology circular
Length 75556 bp
GC Content 0.52 %
Created at NCBI Oct. 20, 2019



Assembly

Genome Data Information

Accession GCF_009176965.1
Assembly Coverage 598


Biosample

Curated Collection Information
Accession 13012676

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 35.631549N;139.745949E
Original Query Type coordinates
Coordinates (Lat/Lon) 35.63/139.75
Address 新港南橋, Shinagawa Pier Line, Konan 1-chome, Shinagawa, Minato, Tokyo, 108-0075, Japan

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusfloRcopy
PGAGtapcopy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAGRamA family antibiotic efflux transcriptional regulatorcopy
PGAGDUF1158 domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAGDUF3363 domain-containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 95 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_022651_00077MPF_F4021240520plus100991.84e-63213
mate-pair-formationNC_010409_00124MPF_F4109841823plus98.3471005.920000000000004e-156486
mate-pair-formationNC_019094_00090MPF_F4182643220plus96.352960815
mate-pair-formationNC_017639_00094MPF_F4413144643plus98.2461004.64e-98316
mate-pair-formationNC_013437_00116MPF_T4682347605plus88.123996.34e-149493
mate-pair-formationNC_013437_00116MPF_T4761049439plus93.9349901165
mate-pair-formationNC_007675_00027MPF_F4982550454plus98.571976.58e-135424
mate-pair-formationNC_017639_00100MPF_F5045451410plus98.4331000602
mate-pair-formationNC_019037_00027MPF_F5238953018plus90997.959999999999999e-126397
mate-pair-formationNC_010488_00021MPF_F5383955644plus97.67410001147
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2