Plasmid NC_025143.1

Sequence

Nucleotide Information

Accession NC_025143.1
Description Escherichia coli plasmid pC59-112, complete sequence
Source refseq
Topology circular
Length 112330 bp
GC Content 0.51 %
Created at NCBI Sept. 29, 2014



Biosample

Curated Collection Information
Accession 14226780

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.37N;8.55E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.37/8.55
Address 10, Hottingerstrasse, Hottingen, Kreis 7, Zurich, District Zurich, Zurich, 8032, Switzerland

ECOSYSTEM
Original Query chicken
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_MK181561.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_MK181561.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_OM142894.1 See Comparison
NC_025144.1 See Comparison
NC_025143.1 See Comparison
NC_025142.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_CP053786.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_LT985273.1 See Comparison
NC_025144.1 See Comparison
NZ_OM105938.1 See Comparison
NC_025142.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181568.1 See Comparison
NC_025144.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_LT985273.1 See Comparison
NZ_OM105938.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_OM142894.1 See Comparison
NC_025142.1 See Comparison
NZ_MH847038.1 See Comparison
NZ_CP053786.1 See Comparison
NZ_CP053788.1 See Comparison
NZ_LT985273.1 See Comparison
NC_025144.1 See Comparison
NC_025142.1 See Comparison
NZ_MK181561.1 See Comparison
NZ_MK181557.1 See Comparison
NZ_MK181568.1 See Comparison
NZ_OM142894.1 See Comparison
NZ_OM105938.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2