Plasmid NC_025139.1

Sequence

Nucleotide Information

Accession NC_025139.1
Description Escherichia coli plasmid pH2291-144, complete sequence
Source refseq
Topology circular
Length 144925 bp
GC Content 0.51 %
Created at NCBI Sept. 29, 2014



Biosample

Curated Collection Information
Accession 14226789

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.37N;8.55E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.37/8.55
Address 10, Hottingerstrasse, Hottingen, Kreis 7, Zurich, District Zurich, Zurich, 8032, Switzerland

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_OY843409.1 See Comparison
NZ_OY839922.1 See Comparison
NZ_OY757950.1 See Comparison
NZ_MW645356.1 See Comparison
NC_025139.1 See Comparison
NZ_OY757132.1 See Comparison
NZ_OY757139.1 See Comparison
NZ_OY757112.1 See Comparison
NZ_OY757950.1 See Comparison
NZ_OY754410.1 See Comparison
NZ_OY754418.1 See Comparison
NZ_OY843409.1 See Comparison
NZ_OY839922.1 See Comparison
NZ_MW645356.1 See Comparison
NZ_OY757132.1 See Comparison
NZ_OY757139.1 See Comparison
NZ_OY757112.1 See Comparison
NZ_OY757950.1 See Comparison
NZ_OY754410.1 See Comparison
NZ_OY754418.1 See Comparison
NZ_OY843409.1 See Comparison
NZ_OY839922.1 See Comparison
NZ_MW645356.1 See Comparison
NZ_OY757950.1 See Comparison
NZ_OY757132.1 See Comparison
NZ_OY757139.1 See Comparison
NZ_OY757112.1 See Comparison
NZ_OY843409.1 See Comparison
NZ_OY839922.1 See Comparison
NZ_MW645356.1 See Comparison
NZ_OY754410.1 See Comparison
NZ_OY754418.1 See Comparison
NZ_OY757132.1 See Comparison
NZ_OY757139.1 See Comparison
NZ_OY757112.1 See Comparison
NZ_OY843409.1 See Comparison
NZ_OY754410.1 See Comparison
NZ_OY754418.1 See Comparison
NZ_OY839922.1 See Comparison
NZ_OY754410.1 See Comparison
NZ_OY757132.1 See Comparison
NZ_OY757139.1 See Comparison
NZ_OY757112.1 See Comparison
NZ_MW645356.1 See Comparison
NZ_OY757950.1 See Comparison
NZ_OY754418.1 See Comparison
NZ_OY843409.1 See Comparison
NZ_OY839922.1 See Comparison
NZ_OY757950.1 See Comparison
NZ_OY757132.1 See Comparison
NZ_OY757139.1 See Comparison
NZ_OY757112.1 See Comparison
NZ_OY754410.1 See Comparison
NZ_OY754418.1 See Comparison
NZ_MW645356.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore