Plasmid NC_021816.1

Sequence

Nucleotide Information

Accession NC_021816.1
Description Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 3609 bp
GC Content 0.43 %
Created at NCBI July 22, 2013



Assembly

Genome Data Information

Accession GCF_000430145.2
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 1832087

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,NY
Original Query Type name
Coordinates (Lat/Lon) 43.16/-75.84
Address USA,NY

ECOSYSTEM
Original Query food,chicken breast
Classification food,host_associated,mamary
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP125075.1 See Comparison
NZ_KU166868.1 See Comparison
NZ_CP063293.1 See Comparison
CP093143.1 See Comparison
CP076087.1 See Comparison
CP082485.1 See Comparison
NZ_CP063293.1 See Comparison
NZ_KU166868.1 See Comparison
NZ_CP040563.1 See Comparison
NZ_CP065110.1 See Comparison
CP125075.1 See Comparison
CP082485.1 See Comparison
CP093143.1 See Comparison
NZ_CP065110.1 See Comparison
NZ_CP040563.1 See Comparison
CP076087.1 See Comparison
NC_021816.1 See Comparison
CP125075.1 See Comparison
NZ_KU166868.1 See Comparison
NZ_CP063293.1 See Comparison
CP082485.1 See Comparison
CP093143.1 See Comparison
CP125075.1 See Comparison
NZ_CP040563.1 See Comparison
CP076087.1 See Comparison
NZ_CP065110.1 See Comparison
CP076087.1 See Comparison
NZ_KU166868.1 See Comparison
NZ_CP063293.1 See Comparison
CP093143.1 See Comparison
CP082485.1 See Comparison
NZ_CP065110.1 See Comparison
NZ_CP040563.1 See Comparison
NZ_CP063293.1 See Comparison
CP125075.1 See Comparison
NZ_KU166868.1 See Comparison
CP076087.1 See Comparison
CP082485.1 See Comparison
CP093143.1 See Comparison
NZ_CP040563.1 See Comparison
NZ_CP065110.1 See Comparison
NZ_CP063293.1 See Comparison
CP125075.1 See Comparison
NZ_KU166868.1 See Comparison
CP093143.1 See Comparison
CP076087.1 See Comparison
CP082485.1 See Comparison
CP125075.1 See Comparison
NZ_CP040563.1 See Comparison
NZ_CP065110.1 See Comparison
CP076087.1 See Comparison
NZ_CP063293.1 See Comparison
NZ_KU166868.1 See Comparison
CP093143.1 See Comparison
CP082485.1 See Comparison
NZ_CP040563.1 See Comparison
NZ_CP065110.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2