Plasmid NC_021657.1

Sequence

Nucleotide Information

Accession NC_021657.1
Description Staphylococcus aureus plasmid pBmb9393, complete sequence
Source refseq
Topology circular
Length 2908 bp
GC Content 0.29 %
Created at NCBI July 5, 2013



Assembly

Genome Data Information

Accession GCF_000418345.1
Assembly Coverage 25


Biosample

Curated Collection Information
Accession 2603524

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Brazil,Rio de Janeiro
Original Query Type name
Coordinates (Lat/Lon) -22.28/-42.42
Address Brazil,Rio de Janeiro

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP012017.1 See Comparison
NZ_CP012016.1 See Comparison
NC_013314.1 See Comparison
NC_019140.1 See Comparison
NC_013314.1 See Comparison
NZ_CP012017.1 See Comparison
NZ_CP012016.1 See Comparison
NC_010626.1 See Comparison
NC_010427.1 See Comparison
NC_010426.1 See Comparison
NZ_CP133444.1 See Comparison
NC_019140.1 See Comparison
NZ_CP012017.1 See Comparison
NC_010626.1 See Comparison
NC_010427.1 See Comparison
NC_010426.1 See Comparison
NZ_CP133444.1 See Comparison
NZ_CP012016.1 See Comparison
NC_019140.1 See Comparison
NC_013314.1 See Comparison
NZ_CP012017.1 See Comparison
NZ_CP012016.1 See Comparison
NC_019140.1 See Comparison
NC_010626.1 See Comparison
NC_010427.1 See Comparison
NC_010426.1 See Comparison
NZ_CP133444.1 See Comparison
NC_013314.1 See Comparison
NC_010626.1 See Comparison
NC_010427.1 See Comparison
NC_010426.1 See Comparison
NC_013314.1 See Comparison
NZ_CP133444.1 See Comparison
NZ_CP012017.1 See Comparison
NZ_CP012016.1 See Comparison
NC_019140.1 See Comparison
NC_013314.1 See Comparison
NC_010626.1 See Comparison
NC_010427.1 See Comparison
NC_010426.1 See Comparison
NZ_CP133444.1 See Comparison
NC_021657.1 See Comparison
NC_019140.1 See Comparison
NZ_CP012017.1 See Comparison
NZ_CP012016.1 See Comparison
NZ_CP133444.1 See Comparison
NC_010626.1 See Comparison
NC_010427.1 See Comparison
NC_010426.1 See Comparison
NZ_CP012017.1 See Comparison
NZ_CP012016.1 See Comparison
NC_010626.1 See Comparison
NC_019140.1 See Comparison
NC_013314.1 See Comparison
NC_010427.1 See Comparison
NC_010426.1 See Comparison
NZ_CP133444.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2