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v. 2024_05_31_v2
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Typing
Plasmid NC_019250.1
Sequence
Nucleotide Information
Accession
NC_019250.1
Description
Shigella flexneri plasmid pSF301-3, complete sequence
Source
refseq
Topology
circular
Length
4043 bp
GC Content
0.53 %
Created at NCBI
April 15, 2013
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Shigella flexneri (623)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Shigella (620)
Species
Shigella_flexneri (623)
Strain
Biosample
Curated Collection Information
Accession
14226109
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
None
Original Query Type
None
Coordinates (Lat/Lon)
Address
None
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Similar Plasmids
based on Mash distance
NC_017321.1
See Comparison
NZ_CP138850.1
See Comparison
NZ_CP138850.1
See Comparison
NZ_CP054914.1
See Comparison
NC_017321.1
See Comparison
NC_017321.1
See Comparison
NZ_CP054914.1
See Comparison
NC_017321.1
See Comparison
NZ_CP138850.1
See Comparison
NZ_CP054914.1
See Comparison
NC_019250.1
See Comparison
NC_017321.1
See Comparison
NZ_CP138850.1
See Comparison
NZ_CP054914.1
See Comparison
NC_017321.1
See Comparison
NZ_CP054914.1
See Comparison
NZ_CP138850.1
See Comparison
NZ_CP138850.1
See Comparison
NZ_CP054914.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore