Plasmid NC_019110.1

Sequence

Nucleotide Information

Accession NC_019110.1
Description Salmonella enterica subsp. enterica serovar Typhimurium plasmid pHLR25, complete sequence
Source refseq
Topology circular
Length 10047 bp
GC Content 0.51 %
Created at NCBI Jan. 23, 2012



Biosample

Curated Collection Information
Accession 14229364

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain,Extremadura,Llerena
Original Query Type name
Coordinates (Lat/Lon) 38.24/-6.01
Address Spain,Extremadura,Llerena

ECOSYSTEM
Original Query human clinical isolate
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP123927.1 See Comparison
NZ_KJ187750.1 See Comparison
NZ_CP069299.1 See Comparison
NC_009807.1 See Comparison
NZ_CP101690.1 See Comparison
NC_019113.1 See Comparison
NZ_CP101690.1 See Comparison
NZ_CP025337.1 See Comparison
NZ_CP065127.1 See Comparison
NZ_CP123927.1 See Comparison
NZ_KJ187750.1 See Comparison
NZ_CP044202.1 See Comparison
NZ_CP027680.1 See Comparison
NZ_CP069299.1 See Comparison
NZ_CP044202.1 See Comparison
NC_019113.1 See Comparison
NC_019110.1 See Comparison
NC_009807.1 See Comparison
NZ_KJ187750.1 See Comparison
NZ_CP027680.1 See Comparison
NZ_CP025337.1 See Comparison
NZ_CP065127.1 See Comparison
NZ_CP123927.1 See Comparison
NZ_CP025337.1 See Comparison
NZ_CP101690.1 See Comparison
NC_009807.1 See Comparison
NZ_CP069299.1 See Comparison
NC_019113.1 See Comparison
NZ_CP044202.1 See Comparison
NZ_CP027680.1 See Comparison
NZ_CP065127.1 See Comparison
NZ_CP069299.1 See Comparison
NZ_CP123927.1 See Comparison
NZ_KJ187750.1 See Comparison
NZ_CP044202.1 See Comparison
NZ_CP101690.1 See Comparison
NC_009807.1 See Comparison
NC_019113.1 See Comparison
NZ_CP123927.1 See Comparison
NZ_CP025337.1 See Comparison
NZ_CP027680.1 See Comparison
NZ_CP065127.1 See Comparison
NZ_KJ187750.1 See Comparison
NC_019113.1 See Comparison
NZ_CP101690.1 See Comparison
NZ_CP069299.1 See Comparison
NZ_CP044202.1 See Comparison
NC_009807.1 See Comparison
NZ_CP027680.1 See Comparison
NZ_CP123927.1 See Comparison
NZ_CP025337.1 See Comparison
NZ_CP065127.1 See Comparison
NZ_KJ187750.1 See Comparison
NZ_CP101690.1 See Comparison
NZ_CP069299.1 See Comparison
NC_009807.1 See Comparison
NC_019113.1 See Comparison
NZ_CP044202.1 See Comparison
NZ_CP065127.1 See Comparison
NZ_CP027680.1 See Comparison
NZ_CP025337.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore