Plasmid NC_019070.1

Sequence

Nucleotide Information

Accession NC_019070.1
Description Escherichia coli plasmid pCERC1, complete sequence
Source refseq
Topology circular
Length 6790 bp
GC Content 0.52 %
Created at NCBI Nov. 2, 2012



Biosample

Curated Collection Information

Accession 14226099

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization




Similar Plasmids

based on Mash distance

NZ_AP027701.1 See Comparison
CP058033.1 See Comparison
CP057750.1 See Comparison
CP057327.1 See Comparison
CP055707.1 See Comparison
NZ_KT988306.1 See Comparison
NZ_CP049083.1 See Comparison
NZ_CP057332.1 See Comparison
NZ_CP099383.1 See Comparison
NZ_CP023375.1 See Comparison
NC_019070.1 See Comparison
CP057750.1 See Comparison
NZ_AP027701.1 See Comparison
CP057327.1 See Comparison
NZ_KT988306.1 See Comparison
CP055707.1 See Comparison
NZ_KT988306.1 See Comparison
NZ_CP049083.1 See Comparison
NZ_CP023375.1 See Comparison
NZ_AP027701.1 See Comparison
CP058033.1 See Comparison
CP057750.1 See Comparison
CP057327.1 See Comparison
CP055707.1 See Comparison
CP058033.1 See Comparison
NZ_CP057332.1 See Comparison
NZ_CP099383.1 See Comparison
NZ_CP049083.1 See Comparison
CP058033.1 See Comparison
NZ_AP027701.1 See Comparison
NZ_CP057332.1 See Comparison
NZ_CP099383.1 See Comparison
NZ_CP023375.1 See Comparison
CP057750.1 See Comparison
CP057327.1 See Comparison
CP055707.1 See Comparison
NZ_KT988306.1 See Comparison
NZ_CP049083.1 See Comparison
NZ_CP023375.1 See Comparison
NZ_CP057332.1 See Comparison
NZ_CP099383.1 See Comparison
CP058033.1 See Comparison
NZ_AP027701.1 See Comparison
CP057750.1 See Comparison
CP057327.1 See Comparison
CP055707.1 See Comparison
NZ_CP049083.1 See Comparison
NZ_KT988306.1 See Comparison
NZ_CP023375.1 See Comparison
NZ_CP057332.1 See Comparison
NZ_CP099383.1 See Comparison
NZ_AP027701.1 See Comparison
CP058033.1 See Comparison
CP057327.1 See Comparison
CP057750.1 See Comparison
CP055707.1 See Comparison
NZ_CP049083.1 See Comparison
NZ_KT988306.1 See Comparison
NZ_CP057332.1 See Comparison
NZ_CP099383.1 See Comparison
NZ_CP023375.1 See Comparison
NZ_CP049083.1 See Comparison
NZ_AP027701.1 See Comparison
CP058033.1 See Comparison
CP057750.1 See Comparison
CP057327.1 See Comparison
CP055707.1 See Comparison
NZ_KT988306.1 See Comparison
NZ_CP099383.1 See Comparison
NZ_CP057332.1 See Comparison
NZ_CP023375.1 See Comparison


Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplussul2copy
rgiAPH(3'')-Ibcopy
rgiAPH(3'')-Ibcopy
amrfinderplusdfrA14copy
amrfinderplusaph(6)-Idcopy
PGAGaminoglycoside O-phosphotransferase APH(6)-Idcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 12 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAJ001708MOBP57335907minus99.4291001.19e-84318
repliconKU302809_00001rep_cluster_233558306436plus89.593990765
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2