Plasmid NC_011073.1
Sequence
Nucleotide Information
| Accession | NC_011073.1 |
|---|---|
| Description | Bacteroides fragilis plasmid pBFP35, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 5594 bp |
| GC Content | 0.40 % |
| Created at NCBI | July 25, 2008 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Bacteroides fragilis (817) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Bacteroidota (976) |
| Class | Bacteroidia (200643) |
| Order | Bacteroidales (171549) |
| Family | Bacteroidaceae (815) |
| Genus | Bacteroides (816) |
| Species | Bacteroides_fragilis (817) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14225685 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
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100
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | NBU/pMV158-type mobilization protein | copy | ||
| PGAG | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | copy | ||
| PGAG | type II toxin-antitoxin system PemK/MazF family toxin | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | protein rep | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | rep_cluster_870 | copy | ||
| MOB-typer | MOBV | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_011073_00002 | MOBV | 577 | 1824 | minus | 100 | 100 | 0 | 841 |
| replicon | 002350__DQ859906 | rep_cluster_870 | 3722 | 4771 | plus | 100 | 100 | 0 | 1940 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |