Plasmid NC_009791.1

Sequence

Nucleotide Information

Accession NC_009791.1
Description Escherichia coli O139:H28 str. E24377A plasmid pETEC_5, complete sequence
Source refseq
Topology circular
Length 5033 bp
GC Content 0.50 %
Created at NCBI Sept. 13, 2007



Assembly

Genome Data Information

Accession GCF_000017745.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 2604038

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NC_009791.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRop family plasmid primer RNA-binding proteincopy
PGAGreplication initiation proteincopy
PGAGhypothetical proteincopy
PGAGDUF3800 domain-containing proteincopy
PGAGMbeD family mobilization/exclusion proteincopy
PGAGMbeB family mobilization proteincopy
PGAGMobC family plasmid mobilization relaxosome proteincopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2350copy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 10 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNC_021845MOBP157243minus1001008.58e-38161
repliconCP035723_00002rep_cluster_2350268812plus93.967980824
relaxaseNC_019076_00002MOBP29874537minus91.0311000902
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2