Plasmid LR890452.1

Sequence

Nucleotide Information

Accession LR890452.1
Description Klebsiella pneumoniae isolate KSB2_8B-sc-2280349 genome assembly, plasmid: 2
Source insd
Topology circular
Length 228690 bp
GC Content 0.53 %
Created at NCBI Oct. 30, 2020



Biosample

Curated Collection Information
Accession 4106433

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusarsAcopy
amrfinderplusarsRcopy
amrfinderplusarsCcopy
amrfinderplusaph(6)-Idcopy
amrfinderplusaph(3'')-Ibcopy
amrfinderplushsp20copy
amrfinderplusblaTEM-1copy
amrfinderplusclpKcopy
amrfinderpluspcoScopy
amrfinderpluspcoDcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 40 entries



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_021231_00058MOBF2903334288minus95.15110003266
relaxaseCP035180_00077MOBF3430035055minus92.46990380
mate-pair-formationNC_021502_00150MPF_T3429136600minus99.35110001452
mate-pair-formationNC_019155_00032MPF_F3917342028minus92.4379901700
mate-pair-formationNC_019165_00034MPF_F4203443386minus95.344990797
mate-pair-formationNC_021654_00016MPF_F4628048241minus98.4719801243
mate-pair-formationNC_011281_00082MPF_F4829448938minus95.3491009.95e-125395
mate-pair-formationNC_022609_00081MPF_F4921750203minus95.1521000652
mate-pair-formationNC_014312_00128MPF_F5063951271minus99.0521004.46e-126398
mate-pair-formationNC_021502_00131MPF_T5166354299minus95.10810001736
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2