Plasmid LR735439.1

Sequence

Nucleotide Information

Accession LR735439.1
Description Staphylococcus epidermidis strain none genome assembly, plasmid: 3
Source insd
Topology linear
Length 2241 bp
GC Content 0.30 %
Created at NCBI Nov. 22, 2019



Assembly

Genome Data Information

Accession GCF_902509515.1
Assembly Coverage 238


Biosample

Curated Collection Information
Accession 5219714

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.756527S;145.060386E
Original Query Type coordinates
Coordinates (Lat/Lon) -37.76/145.06
Address Austin Hospital, 145, Studley Road, Heidelberg, Melbourne, City of Banyule, Victoria, 3084, Australia

ECOSYSTEM
Original Query Homo sapiens,clinical
Classification anthropogenic,hospital,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP093207.1 See Comparison
NZ_CP093211.1 See Comparison
NZ_CP093169.1 See Comparison
NC_013350.1 See Comparison
NZ_CP031669.1 See Comparison
NZ_CP031672.1 See Comparison
NZ_CP132364.1 See Comparison
CP127546.1 See Comparison
CP053011.1 See Comparison
LR735439.1 See Comparison
CP052972.1 See Comparison
CP052970.1 See Comparison
CP052954.1 See Comparison
CP052952.1 See Comparison
CP052987.1 See Comparison
NZ_CP093207.1 See Comparison
NZ_CP093211.1 See Comparison
NZ_CP093169.1 See Comparison
NZ_CP031669.1 See Comparison
NC_013350.1 See Comparison
NZ_CP031672.1 See Comparison
CP127546.1 See Comparison
NZ_CP132364.1 See Comparison
NZ_CP093207.1 See Comparison
CP053011.1 See Comparison
CP052972.1 See Comparison
CP052970.1 See Comparison
CP052954.1 See Comparison
CP052952.1 See Comparison
CP052987.1 See Comparison
NZ_CP093211.1 See Comparison
NZ_CP093169.1 See Comparison
NZ_CP031669.1 See Comparison
NC_013350.1 See Comparison
NZ_CP031672.1 See Comparison
CP053011.1 See Comparison
NZ_CP132364.1 See Comparison
CP127546.1 See Comparison
CP052972.1 See Comparison
NZ_CP093207.1 See Comparison
CP052970.1 See Comparison
CP052954.1 See Comparison
CP052952.1 See Comparison
CP052987.1 See Comparison
NZ_CP093211.1 See Comparison
NZ_CP093169.1 See Comparison
NZ_CP031669.1 See Comparison
NC_013350.1 See Comparison
NZ_CP031672.1 See Comparison
NZ_CP132364.1 See Comparison
CP053011.1 See Comparison
CP127546.1 See Comparison
CP052972.1 See Comparison
NZ_CP093207.1 See Comparison
CP052970.1 See Comparison
CP052954.1 See Comparison
CP052952.1 See Comparison
CP052987.1 See Comparison
NZ_CP093211.1 See Comparison
NZ_CP093169.1 See Comparison
NZ_CP031669.1 See Comparison
NC_013350.1 See Comparison
NZ_CP031672.1 See Comparison
CP053011.1 See Comparison
NZ_CP132364.1 See Comparison
CP127546.1 See Comparison
CP052970.1 See Comparison
CP052954.1 See Comparison
CP052952.1 See Comparison
CP052987.1 See Comparison
CP052972.1 See Comparison
NZ_CP093207.1 See Comparison
NZ_CP093211.1 See Comparison
NZ_CP093169.1 See Comparison
CP053011.1 See Comparison
NZ_CP031669.1 See Comparison
NZ_CP031672.1 See Comparison
CP127546.1 See Comparison
NC_013350.1 See Comparison
NZ_CP132364.1 See Comparison
CP052972.1 See Comparison
CP052970.1 See Comparison
NZ_CP093207.1 See Comparison
NZ_CP093211.1 See Comparison
NZ_CP093169.1 See Comparison
NZ_CP031669.1 See Comparison
NZ_CP031672.1 See Comparison
CP127546.1 See Comparison
CP053011.1 See Comparison
CP052972.1 See Comparison
CP052970.1 See Comparison
CP052954.1 See Comparison
CP052952.1 See Comparison
CP052987.1 See Comparison
NC_013350.1 See Comparison
NZ_CP132364.1 See Comparison
CP052954.1 See Comparison
CP052952.1 See Comparison
CP052987.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2