Plasmid LC567054.1

Sequence

Nucleotide Information

Accession LC567054.1
Description Escherichia coli P16-1 plasmid pP16-1 DNA, complete sequence
Source insd
Topology circular
Length 91143 bp
GC Content 0.50 %
Created at NCBI April 3, 2024



Biosample

Curated Collection Information
Accession 40745239

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Sus scrofa
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

LC567096.1 See Comparison
LC567071.1 See Comparison
NC_018659.1 See Comparison
NC_022742.1 See Comparison
LT985289.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_CP029903.1 See Comparison
NZ_CP023534.1 See Comparison
LC567096.1 See Comparison
NZ_CP124474.1 See Comparison
NZ_CP136553.1 See Comparison
LC567071.1 See Comparison
NZ_CP031903.1 See Comparison
NC_018659.1 See Comparison
NC_022742.1 See Comparison
NZ_CP029903.1 See Comparison
NC_018659.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
LC567096.1 See Comparison
LC567071.1 See Comparison
NC_022742.1 See Comparison
NZ_CP124474.1 See Comparison
NZ_CP136553.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_CP029903.1 See Comparison
NZ_CP136553.1 See Comparison
NZ_CP124474.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
LC567096.1 See Comparison
LC567071.1 See Comparison
NZ_CP136553.1 See Comparison
NC_018659.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
NZ_CP124474.1 See Comparison
NC_022742.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_CP029903.1 See Comparison
NC_018659.1 See Comparison
LC567096.1 See Comparison
LC567071.1 See Comparison
LC567054.1 See Comparison
NZ_CP031903.1 See Comparison
NC_022742.1 See Comparison
LT985289.1 See Comparison
NZ_CP029903.1 See Comparison
NZ_CP023534.1 See Comparison
NZ_CP136553.1 See Comparison
NZ_CP124474.1 See Comparison
LC567096.1 See Comparison
LC567071.1 See Comparison
NC_018659.1 See Comparison
NC_022742.1 See Comparison
NZ_CP029903.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_CP124474.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
NZ_CP136553.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore