Plasmid CP142581.1

Sequence

Nucleotide Information

Accession CP142581.1
Description Escherichia coli strain ExPEC_A186 plasmid pA186_p0, complete sequence
Source insd
Topology circular
Length 101450 bp
GC Content 0.51 %
Created at NCBI Jan. 16, 2024



Assembly

Genome Data Information

Accession GCA_034539815.2
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 38414318

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Hebei
Original Query Type name
Coordinates (Lat/Lon) 39.00/116.00
Address China,Hebei

ECOSYSTEM
Original Query swine,pure culture,lung
Classification cell_culture,host_associated,lung,respiratory_system
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgisul2copy
amrfinderplusfloRcopy
PGAGhypothetical proteincopy
PGAGyacBcopy
PGAG3'-5' exonucleasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGProQ/FINO family proteincopy
PGAGcolicin Ia central receptor-binding domain-containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 116 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNC_002145MOBP3639036482minus1001004.37e-41172
repliconCP001118IncI-gamma/K19035691387plus10010001906
relaxaseNC_019097MOBP3685239545plus95.2129901686
mate-pair-formationNC_019097_00056MPF_I3961841879minus98.8069201446
mate-pair-formationNC_022267_00057MPF_I5004451243minus99.251000769
mate-pair-formationNC_019111_00038MPF_I5599756398minus95.5221001.17e-50178
mate-pair-formationNC_023290_00086MPF_I5645256976minus99.4291003.4400000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I5697957680minus99.5731004.56e-153477
mate-pair-formationNC_019097_00075MPF_I5897559955minus99.6941000656
mate-pair-formationNC_022267_00069MPF_I6001160658minus98.148916.16e-142445
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2