Plasmid CP141422.1

Sequence

Nucleotide Information

Accession CP141422.1
Description Staphylococcus aureus strain Sau113 plasmid unnamed1, complete sequence
Source insd
Topology circular
Length 20696 bp
GC Content 0.28 %
Created at NCBI Jan. 10, 2024



Assembly

Genome Data Information

Accession GCA_035486585.1
Assembly Coverage 17


Biosample

Curated Collection Information
Accession 38508049

PLASMID INFORMATION
Genotype MRSA

GEOGRAPHICAL INFORMATION
Original Query 1.1748S;36.8304E
Original Query Type coordinates
Coordinates (Lat/Lon) -1.17/36.83
Address GK Kiambu Prisons, Boma Road, Edenville, Indian Bazaar, Kiambu Township ward, Kiambu Town, Kiambu, Central Kenya, 00900, Kenya

ECOSYSTEM
Original Query Homo sapiens,clinical
Classification anthropogenic,hospital,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 43
Host-associated Sex male

DISEASE
Original Query Skin and soft tissue infection
DOID/SYMP
  • Skin disease (DOID:37 )
    • An integumentary system disease that is located_in skin.
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

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NZ_CP012980.1 See Comparison
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NZ_CP029083.1 See Comparison
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NZ_CP120021.1 See Comparison
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CP127712.1 See Comparison
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CP127617.1 See Comparison
CP127610.1 See Comparison
CP127555.1 See Comparison
NZ_CP120037.1 See Comparison
NZ_CP150738.1 See Comparison
CP141426.1 See Comparison
NZ_CP047829.1 See Comparison
NZ_CP047812.1 See Comparison
NZ_CP047844.1 See Comparison
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NZ_CP043844.1 See Comparison
NZ_CP062328.1 See Comparison
NZ_CP062385.1 See Comparison
NZ_CP062341.1 See Comparison
NZ_CP012980.1 See Comparison
NZ_CP089155.1 See Comparison
NZ_CP089164.1 See Comparison
NZ_CP083672.1 See Comparison
CP075571.1 See Comparison
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CP127610.1 See Comparison
CP127555.1 See Comparison
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NZ_CP070984.1 See Comparison
NZ_CP089155.1 See Comparison
NZ_CP062337.1 See Comparison
NZ_CP062328.1 See Comparison
NZ_CP062385.1 See Comparison
NZ_CP062341.1 See Comparison
NZ_CP089164.1 See Comparison
NZ_CP083672.1 See Comparison
CP075571.1 See Comparison
CP075573.1 See Comparison
CP075575.1 See Comparison
CP075577.1 See Comparison
CP075579.1 See Comparison
NZ_CP012980.1 See Comparison
NZ_AP024319.1 See Comparison
NZ_AP024316.1 See Comparison
NC_013313.1 See Comparison
NC_013304.1 See Comparison
NC_013293.1 See Comparison
NC_017339.1 See Comparison
NZ_CP029083.1 See Comparison
NZ_CP022719.1 See Comparison
NZ_CP022721.1 See Comparison
NZ_CP024999.1 See Comparison
CP127724.1 See Comparison
NZ_CP120021.1 See Comparison
CP127643.1 See Comparison
CP127617.1 See Comparison
CP127610.1 See Comparison
CP127712.1 See Comparison
CP127711.1 See Comparison
NZ_CP120037.1 See Comparison
CP127555.1 See Comparison
CP141426.1 See Comparison
NZ_CP150738.1 See Comparison
NZ_CP043844.1 See Comparison
NZ_CP047829.1 See Comparison
NZ_CP047812.1 See Comparison
NZ_CP047844.1 See Comparison
NZ_CP022719.1 See Comparison
NZ_CP070984.1 See Comparison
NZ_CP062337.1 See Comparison
NZ_CP062328.1 See Comparison
NZ_CP062385.1 See Comparison
NZ_CP062341.1 See Comparison
NZ_CP089155.1 See Comparison
NZ_CP089164.1 See Comparison
CP075571.1 See Comparison
CP075573.1 See Comparison
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CP075577.1 See Comparison
CP075579.1 See Comparison
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NZ_AP024316.1 See Comparison
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NC_013313.1 See Comparison
NC_013304.1 See Comparison
NC_013293.1 See Comparison
NC_017339.1 See Comparison
NZ_CP083672.1 See Comparison
NZ_CP022721.1 See Comparison
CP127643.1 See Comparison
NZ_CP029083.1 See Comparison
NZ_CP024999.1 See Comparison
NZ_CP120021.1 See Comparison
CP127617.1 See Comparison
CP127610.1 See Comparison
CP127555.1 See Comparison
CP127724.1 See Comparison
CP127712.1 See Comparison
CP127711.1 See Comparison
NZ_CP150738.1 See Comparison
CP141426.1 See Comparison
NZ_CP047829.1 See Comparison
NZ_CP120037.1 See Comparison
NZ_CP047812.1 See Comparison
NZ_CP047844.1 See Comparison
NZ_CP089155.1 See Comparison
NZ_CP070984.1 See Comparison
NZ_CP062337.1 See Comparison
NZ_CP062328.1 See Comparison
NZ_CP062385.1 See Comparison
NZ_CP062341.1 See Comparison
NZ_CP043844.1 See Comparison
NZ_CP089164.1 See Comparison
CP075571.1 See Comparison
CP075573.1 See Comparison
CP075575.1 See Comparison
CP075577.1 See Comparison
CP075579.1 See Comparison
NZ_AP024319.1 See Comparison
NZ_CP083672.1 See Comparison
NZ_AP024316.1 See Comparison
NZ_CP029083.1 See Comparison
NZ_CP012980.1 See Comparison
NC_013304.1 See Comparison
NC_013293.1 See Comparison
NC_017339.1 See Comparison
NC_013313.1 See Comparison
NZ_CP022719.1 See Comparison
NZ_CP022721.1 See Comparison
NZ_CP024999.1 See Comparison
NZ_CP120021.1 See Comparison
CP127643.1 See Comparison
CP127617.1 See Comparison
CP127610.1 See Comparison
CP127555.1 See Comparison
NZ_CP150738.1 See Comparison
CP127724.1 See Comparison
CP127712.1 See Comparison
CP127711.1 See Comparison
CP141426.1 See Comparison
NZ_CP089155.1 See Comparison
NZ_CP070984.1 See Comparison
NZ_CP062337.1 See Comparison
NZ_CP062328.1 See Comparison
NZ_CP120037.1 See Comparison
NZ_CP047829.1 See Comparison
NZ_CP047812.1 See Comparison
NZ_CP047844.1 See Comparison
NZ_CP043844.1 See Comparison
NZ_CP062385.1 See Comparison
NZ_CP062341.1 See Comparison
NZ_CP089164.1 See Comparison
NZ_CP083672.1 See Comparison
CP075571.1 See Comparison
CP075573.1 See Comparison
CP075575.1 See Comparison
CP075577.1 See Comparison
CP075579.1 See Comparison
NZ_CP022719.1 See Comparison
NZ_AP024319.1 See Comparison
NZ_AP024316.1 See Comparison
NZ_CP012980.1 See Comparison
NC_013293.1 See Comparison
NC_017339.1 See Comparison
NC_013313.1 See Comparison
NC_013304.1 See Comparison
NZ_CP022721.1 See Comparison
CP127643.1 See Comparison
NZ_CP029083.1 See Comparison
NZ_CP024999.1 See Comparison
NZ_CP120021.1 See Comparison
CP127617.1 See Comparison
CP127610.1 See Comparison
CP127555.1 See Comparison
NZ_CP150738.1 See Comparison
CP127724.1 See Comparison
CP127712.1 See Comparison
CP127711.1 See Comparison
CP141426.1 See Comparison
CP141422.1 See Comparison
NZ_CP047829.1 See Comparison
NZ_CP120037.1 See Comparison
NZ_CP047812.1 See Comparison
NZ_CP070984.1 See Comparison
NZ_CP047844.1 See Comparison
NZ_CP043844.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2