Plasmid CP134921.1

Sequence

Nucleotide Information

Accession	CP134921.1
Description	Escherichia coli strain 1588 plasmid pMB8775_3, complete sequence
Source	insd
Topology	circular
Length	57676 bp
GC Content	0.51 %
Created at NCBI	Sept. 27, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_032062925.1
Assembly Coverage	106

Biosample

Curated Collection Information

Accession	32977864

PLASMID INFORMATION

Genotype	ST167

GEOGRAPHICAL INFORMATION

Original Query	29.7068N;95.3971W
Original Query Type	coordinates
Coordinates (Lat/Lon)	29.71/-95.40
Address	University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	bacteremia
DOID/SYMP	Bacterial infectious disease (DOID:104 ) A disease by infectious agent that results_in infection, has_material_basis_in Bacteria. Has_material_basis_in: ['bacteria']

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP134921.1	See Comparison

Plasmid Visualization

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Search:

Source	Element Name	Display	Sequence	Favorite

rgi	TEM-244		copy
amrfinderplus	tet(A)		copy
amrfinderplus	rmtB1		copy
amrfinderplus	sul2		copy
amrfinderplus	floR		copy
amrfinderplus	aph(3')-IIa		copy
amrfinderplus	aph(6)-Id		copy
amrfinderplus	blaCTX-M-55		copy
amrfinderplus	aph(3'')-Ib		copy
amrfinderplus	dfrA14		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 64 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	X01654	ColE10	775	951	plus	100	100	2.01e-87	327
replicon	000215__KC853434_00019	IncX1	12832	13278	plus	100	100	0	826
relaxase	NC_010695_00006	MOBQ	39777	40592	plus	82.721	100	8.63e-139	442
relaxase	CP009870_00005	MOBQ	55500	56450	minus	90.536	100	0	598
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 4 of 4 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2