Plasmid CP133391.1

Sequence

Nucleotide Information

Accession CP133391.1
Description Klebsiella pneumoniae strain KLB_MDR_391377 plasmid p377C1, complete sequence
Source insd
Topology circular
Length 122824 bp
GC Content 0.49 %
Created at NCBI Sept. 3, 2023



Assembly

Genome Data Information

Accession GCA_031172635.1
Assembly Coverage 20


Biosample

Curated Collection Information
Accession 35883625

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query India,Bangalore
Original Query Type name
Coordinates (Lat/Lon) 12.98/77.59
Address India,Bangalore

ECOSYSTEM
Original Query Homo sapiens,Urinary bladder,urine
Classification bladder,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 35Y
Host-associated Sex male

DISEASE
Original Query Adeno carcinoma ascending colon,Recovery,Adeno carcinoma stage 2,Post-operative recovery
DOID/SYMP
  • Carcinoma (DOID:305 )
    • A cell type cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
    • Derives_from: ['epithelial cells']
    • Has_material_basis_in: ['abnormally proliferating cells derives_from epithelial cells']
  • Colon carcinoma (DOID:1520 )
    • A colon cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
    • Derives_from: ['epithelial cells']
    • Has_material_basis_in: ['abnormally proliferating cells derives_from epithelial cells']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore