Plasmid CP128767.1

Sequence

Nucleotide Information

Accession CP128767.1
Description Klebsiella pneumoniae strain CRE-041 plasmid pCRE-041_2, complete sequence
Source insd
Topology circular
Length 57589 bp
GC Content 0.53 %
Created at NCBI July 3, 2023



Assembly

Genome Data Information

Accession GCA_030389785.1
Assembly Coverage 46.1308


Biosample

Curated Collection Information
Accession 35878150

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.8945N;87.6208W
Original Query Type coordinates
Coordinates (Lat/Lon) 41.89/-87.62
Address Feinberg Pavilion, 251, East Huron Street, Magnificent Mile, Near North Side, Chicago, Cook County, Illinois, 60611, United States

ECOSYSTEM
Original Query Homo sapiens,lung
Classification host_associated,lung,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP128767.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusdfrA14copy
amrfinderplusblaKPC-3copy
PGAGreplication initiation proteincopy
PGAGrecombinase family proteincopy
PGAGintI1copy
PGAGIS6-like element IS6100 family transposasecopy
PGAGtype II site-specific deoxyribonucleasecopy
PGAGDNA cytosine methyltransferasecopy
PGAGhypothetical proteincopy
PGAGrestriction endonucleasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 66 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_015599_00019MOBF3914842324minus99.7179802031
oriTNZ_CP016498MOBF4433344600minus1001008.36e-138496
replicon000153__NC_019087_00001IncN1720plus99.72210001319
mate-pair-formationNC_009131_00030MPF_T1278613100plus1001006.62e-63212
mate-pair-formationNC_011617_00041MPF_T1310315700plus10010001811
mate-pair-formationNC_014368_00014MPF_T1668517722plus99.4221003.38e-180560
mate-pair-formationNC_007682_00044MPF_T1794418639plus1001001e-154481
mate-pair-formationNC_008612_00190MPF_T1865319534plus1001001.2e-176547
mate-pair-formationNC_022375_00024MPF_T4232743853minus99.8041000996
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 9 of 9 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2