Plasmid CP128712.1

Sequence

Nucleotide Information

Accession CP128712.1
Description Klebsiella pneumoniae strain KPN1402 plasmid pKPN1402_3, complete sequence
Source insd
Topology circular
Length 79754 bp
GC Content 0.51 %
Created at NCBI July 3, 2023



Assembly

Genome Data Information

Accession GCA_030387785.1
Assembly Coverage 105.943


Biosample

Curated Collection Information
Accession 35878161

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.710689N;95.400586W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address Houston Methodist - Scurlock Tower, 6560, Fannin Street, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,bile
Classification host_associated,liver
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Klebsiella Infections
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore