Plasmid CP126919.1

Sequence

Nucleotide Information

Accession CP126919.1
Description Staphylococcus aureus strain AUH_SA_2023_5 plasmid unnamed, complete sequence
Source insd
Topology circular
Length 20680 bp
GC Content 0.28 %
Created at NCBI July 12, 2023



Assembly

Genome Data Information

Accession GCA_030439875.1
Assembly Coverage 414


Biosample

Curated Collection Information
Accession 34360576

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 56.19N;10.17E
Original Query Type coordinates
Coordinates (Lat/Lon) 56.19/10.17
Address Aarhus University Hospital, Palle Juul-Jensens Boulevard, Brendstrup, Aarhus, Aarhus Municipality, Central Denmark Region, 8210, Denmark

ECOSYSTEM
Original Query Homo sapiens,The strain was isolated from blood culture
Classification blood,cell_culture,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Human bacteremia with S. aureus
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_MH785247.1 See Comparison
NZ_MH785254.1 See Comparison
NZ_CP047846.1 See Comparison
CP049391.1 See Comparison
NZ_CP062349.1 See Comparison
NZ_CP062438.1 See Comparison
CP127808.1 See Comparison
NZ_CP080002.1 See Comparison
NC_013303.1 See Comparison
NC_013301.1 See Comparison
NC_013290.1 See Comparison
CP127685.1 See Comparison
NC_005011.1 See Comparison
CP127774.1 See Comparison
CP127703.1 See Comparison
CP127630.1 See Comparison
CP127593.1 See Comparison
CP127574.1 See Comparison
CP127701.1 See Comparison
CP127682.1 See Comparison
CP127550.1 See Comparison
NZ_CP047846.1 See Comparison
NZ_CP149806.1 See Comparison
NZ_MH785247.1 See Comparison
NZ_MH785254.1 See Comparison
NZ_CP062438.1 See Comparison
CP049391.1 See Comparison
NZ_CP080002.1 See Comparison
NZ_CP062349.1 See Comparison
NZ_MH785254.1 See Comparison
NC_013303.1 See Comparison
NC_013301.1 See Comparison
NC_013290.1 See Comparison
NC_005011.1 See Comparison
CP127630.1 See Comparison
CP127593.1 See Comparison
CP127574.1 See Comparison
CP127550.1 See Comparison
CP127808.1 See Comparison
CP127774.1 See Comparison
CP127703.1 See Comparison
CP127701.1 See Comparison
CP127682.1 See Comparison
CP127685.1 See Comparison
NZ_CP149806.1 See Comparison
NZ_CP047846.1 See Comparison
NZ_MH785247.1 See Comparison
NZ_CP062438.1 See Comparison
CP049391.1 See Comparison
NC_013303.1 See Comparison
NZ_CP062349.1 See Comparison
NZ_CP080002.1 See Comparison
NC_013301.1 See Comparison
NC_013290.1 See Comparison
CP127630.1 See Comparison
NC_005011.1 See Comparison
CP127808.1 See Comparison
CP127774.1 See Comparison
CP127703.1 See Comparison
CP127701.1 See Comparison
CP127593.1 See Comparison
CP127682.1 See Comparison
CP127574.1 See Comparison
CP127685.1 See Comparison
CP127550.1 See Comparison
NZ_CP149806.1 See Comparison
NZ_MH785247.1 See Comparison
NZ_MH785254.1 See Comparison
CP049391.1 See Comparison
NZ_CP047846.1 See Comparison
NC_013301.1 See Comparison
NZ_CP062438.1 See Comparison
NZ_CP080002.1 See Comparison
NZ_CP062349.1 See Comparison
NC_013290.1 See Comparison
CP127808.1 See Comparison
NC_013303.1 See Comparison
CP126919.1 See Comparison
NC_005011.1 See Comparison
CP127774.1 See Comparison
CP127682.1 See Comparison
CP127703.1 See Comparison
CP127685.1 See Comparison
CP127701.1 See Comparison
NZ_CP062438.1 See Comparison
CP127630.1 See Comparison
CP127593.1 See Comparison
CP127574.1 See Comparison
CP127550.1 See Comparison
NZ_CP047846.1 See Comparison
NZ_CP149806.1 See Comparison
NZ_MH785247.1 See Comparison
NZ_MH785254.1 See Comparison
CP049391.1 See Comparison
NZ_CP080002.1 See Comparison
NZ_CP062349.1 See Comparison
NC_005011.1 See Comparison
NC_013303.1 See Comparison
NC_013301.1 See Comparison
NC_013290.1 See Comparison
CP127703.1 See Comparison
CP127701.1 See Comparison
CP127682.1 See Comparison
CP127685.1 See Comparison
CP127630.1 See Comparison
CP127550.1 See Comparison
CP127808.1 See Comparison
CP127774.1 See Comparison
CP127593.1 See Comparison
CP127574.1 See Comparison
NZ_CP047846.1 See Comparison
NZ_MH785247.1 See Comparison
NZ_MH785254.1 See Comparison
NZ_CP149806.1 See Comparison
CP127808.1 See Comparison
NZ_CP062349.1 See Comparison
CP049391.1 See Comparison
NZ_CP062438.1 See Comparison
NZ_CP080002.1 See Comparison
NC_013303.1 See Comparison
NC_013301.1 See Comparison
NC_013290.1 See Comparison
NC_005011.1 See Comparison
CP127703.1 See Comparison
CP127701.1 See Comparison
CP127682.1 See Comparison
CP127685.1 See Comparison
CP127630.1 See Comparison
CP127593.1 See Comparison
CP127774.1 See Comparison
NZ_CP149806.1 See Comparison
CP127574.1 See Comparison
CP127550.1 See Comparison
NZ_CP062438.1 See Comparison
NZ_CP047846.1 See Comparison
CP049391.1 See Comparison
NZ_MH785247.1 See Comparison
NZ_MH785254.1 See Comparison
NZ_CP080002.1 See Comparison
NZ_CP062349.1 See Comparison
NC_013303.1 See Comparison
NC_013301.1 See Comparison
NC_013290.1 See Comparison
CP127808.1 See Comparison
NC_005011.1 See Comparison
CP127774.1 See Comparison
NZ_CP149806.1 See Comparison
CP127703.1 See Comparison
CP127701.1 See Comparison
CP127682.1 See Comparison
CP127685.1 See Comparison
CP127550.1 See Comparison
CP127630.1 See Comparison
CP127593.1 See Comparison
CP127574.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2