Plasmid CP124976.1

Sequence

Nucleotide Information

Accession CP124976.1
Description Escherichia coli strain KSE-D22 plasmid pKSE-D22_2, complete sequence
Source insd
Topology circular
Length 5164 bp
GC Content 0.48 %
Created at NCBI May 16, 2023



Assembly

Genome Data Information

Accession GCA_030019715.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 34598757

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 0.19N;32.35E
Original Query Type coordinates
Coordinates (Lat/Lon) 0.19/32.35
Address Senene Buzingu, Mpigi, Central Region, Uganda

ECOSYSTEM
Original Query Sewage
Classification sewage,wastewater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR890613.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP070001.1 See Comparison
NZ_LR890613.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP070001.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_LR890613.1 See Comparison
NZ_CP070001.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_LR890613.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP070001.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_LR890613.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP101205.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_CP070001.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_LR890613.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NZ_AP025750.1 See Comparison
CP124976.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP070001.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore