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v. 2024_05_31_v2
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Typing
Plasmid CP123657.1
Sequence
Nucleotide Information
Accession
CP123657.1
Description
Salmonella enterica subsp. enterica serovar Reading strain CVM N58646 plasmid pN58646-2, complete sequence
Source
insd
Topology
circular
Length
5055 bp
GC Content
0.49 %
Created at NCBI
April 20, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (165302)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCA_010913555.2
Assembly Coverage
632
Biosample
Curated Collection Information
Accession
5416439
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA,MN
Original Query Type
name
Coordinates (Lat/Lon)
45.99/-94.61
Address
USA,MN
ECOSYSTEM
Original Query
ground turkey
Classification
food,meat
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP123658.1
CP123656.1
Similar Plasmids
based on Mash distance
NZ_MT507878.1
See Comparison
NZ_CP057361.1
See Comparison
NZ_CP149296.1
See Comparison
NZ_MT507878.1
See Comparison
NZ_CP057361.1
See Comparison
NZ_CP149296.1
See Comparison
NZ_CP149296.1
See Comparison
NZ_MT507878.1
See Comparison
NZ_CP057361.1
See Comparison
NZ_CP149296.1
See Comparison
NZ_MT507878.1
See Comparison
NZ_CP057361.1
See Comparison
NZ_CP149296.1
See Comparison
NZ_MT507878.1
See Comparison
NZ_CP057361.1
See Comparison
NZ_MT507878.1
See Comparison
NZ_CP057361.1
See Comparison
CP123657.1
See Comparison
NZ_CP149296.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore