Plasmid CP114343.1

Sequence

Nucleotide Information

Accession CP114343.1
Description Escherichia coli strain 2022CK-00557 plasmid unnamed3, complete sequence
Source insd
Topology circular
Length 41466 bp
GC Content 0.45 %
Created at NCBI Dec. 29, 2022



Assembly

Genome Data Information

Accession GCA_025779775.2
Assembly Coverage 32


Biosample

Curated Collection Information
Accession 31390129

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP033354.2 See Comparison
NZ_CP127008.1 See Comparison
CP123653.1 See Comparison
NZ_AP027835.1 See Comparison
CP057780.1 See Comparison
CP123653.1 See Comparison
NZ_CP045957.1 See Comparison
CP073604.1 See Comparison
CP073612.1 See Comparison
NZ_CP033354.2 See Comparison
NZ_CP127008.1 See Comparison
CP057780.1 See Comparison
NZ_AP027835.1 See Comparison
NZ_CP045957.1 See Comparison
CP073604.1 See Comparison
CP114343.1 See Comparison
CP073612.1 See Comparison
NZ_CP127008.1 See Comparison
NZ_CP033354.2 See Comparison
CP123653.1 See Comparison
NZ_AP027835.1 See Comparison
NZ_CP045957.1 See Comparison
CP057780.1 See Comparison
NZ_CP127008.1 See Comparison
CP073604.1 See Comparison
CP073612.1 See Comparison
NZ_CP033354.2 See Comparison
CP123653.1 See Comparison
NZ_CP033354.2 See Comparison
NZ_AP027835.1 See Comparison
CP057780.1 See Comparison
NZ_CP045957.1 See Comparison
CP073604.1 See Comparison
CP073612.1 See Comparison
CP057780.1 See Comparison
NZ_CP127008.1 See Comparison
CP123653.1 See Comparison
NZ_AP027835.1 See Comparison
NZ_CP033354.2 See Comparison
NZ_CP045957.1 See Comparison
CP073604.1 See Comparison
CP073612.1 See Comparison
NZ_AP027835.1 See Comparison
CP123653.1 See Comparison
NZ_CP127008.1 See Comparison
NZ_CP033354.2 See Comparison
CP057780.1 See Comparison
NZ_CP045957.1 See Comparison
CP073604.1 See Comparison
CP073612.1 See Comparison
CP073604.1 See Comparison
NZ_CP127008.1 See Comparison
NZ_AP027835.1 See Comparison
CP123653.1 See Comparison
CP057780.1 See Comparison
NZ_CP045957.1 See Comparison
CP073612.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2