Plasmid CP113393.1

Sequence

Nucleotide Information

Accession CP113393.1
Description MAG: Bacillus paranthracis isolate 1710 plasmid unnamed8, complete sequence
Source insd
Topology circular
Length 3562 bp
GC Content 0.36 %
Created at NCBI Dec. 13, 2022


Host Taxonomy

According to NCBI Taxonomy

Assigned Host Bacillus paranthracis (2026186)
Lineage
Superkingdom Bacteria (2)
Phylum Bacillota (1239)
Class Bacilli (91061)
Order Bacillales (1385)
Family Bacillaceae (186817)
Genus Bacillus (1386)
Species Bacillus_paranthracis (2026186)
Strain


Assembly

Genome Data Information

Accession GCA_026874105.1
Assembly Coverage 50


Biosample

Curated Collection Information
Accession 30148864

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Russia, Volga Federal District,Republic of Mordovia
Original Query Type name
Coordinates (Lat/Lon) 54.44/44.47
Address Russia, Volga Federal District,Republic of Mordovia

ECOSYSTEM
Original Query bovine,mixed culture metagenome,metagenomic assembly,milk
Classification cell_culture,drink,food,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2