Plasmid CP109702.1
Sequence
Nucleotide Information
| Accession | CP109702.1 |
|---|---|
| Description | Klebsiella pneumoniae strain 2017-45-38-02 plasmid p2017-45-38-02_1, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 188450 bp |
| GC Content | 0.53 % |
| Created at NCBI | June 6, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 30974108 |
|---|
PLASMID INFORMATION
| Genotype | ST14 |
|---|
GEOGRAPHICAL INFORMATION
| Original Query | USA |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.78/-100.45 |
| Address | USA |
ECOSYSTEM
| Original Query | Homo sapiens,whole organism,swab |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
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Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | silC | copy | ||
| amrfinderplus | silB | copy | ||
| amrfinderplus | silA | copy | ||
| amrfinderplus | silF | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | arsC | copy | ||
| amrfinderplus | arsB | copy | ||
| amrfinderplus | silR | copy | ||
| amrfinderplus | silS | copy | ||
| amrfinderplus | arsA | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 164 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000107__CP014778_00094 | IncFIB | 90761 | 91771 | plus | 90.702 | 100 | 0 | 1347 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |