Plasmid CP102229.1

Sequence

Nucleotide Information

Accession CP102229.1
Description Shigella flexneri strain 833385 plasmid p833385_2, complete sequence
Source insd
Topology circular
Length 67422 bp
GC Content 0.52 %
Created at NCBI Aug. 2, 2022



Assembly

Genome Data Information

Accession GCA_013837865.2
Assembly Coverage 143.6


Biosample

Curated Collection Information
Accession 13208468

PLASMID INFORMATION
Genotype ST245

GEOGRAPHICAL INFORMATION
Original Query United Kingdom,United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom,United Kingdom

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-27copy
PGAGtraCcopy
PGAGtrbIcopy
PGAGtraWcopy
PGAGconjugal transfer pilus assembly protein TraUcopy
PGAGhypothetical proteincopy
PGAGtrbCcopy
PGAGtraNcopy
PGAGconjugal transfer protein TrbEcopy
PGAGtraFcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 92 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAP014804MOBP5880359352plus10010001016
repliconMK878891_00042IncFIA2947730304plus99.5179701507
relaxaseNC_017627_00068MOBF1910024367plus97.09610003343
mate-pair-formationNC_013437_00116MPF_T102625plus91.5149901648
mate-pair-formationNC_007675_00027MPF_F30113640plus99.048973.79e-135424
mate-pair-formationNC_017639_00100MPF_F36404596plus98.7461000605
mate-pair-formationNC_018966_00040MPF_F50275611plus97.949924.29e-124393
mate-pair-formationNC_019094_00068MPF_F56117458plus94.48110001144
mate-pair-formationNC_008460_00107MPF_F1178114600plus97.3410001785
mate-pair-formation08-5333_00200MPF_Unknown1687519097plus96.90910001431
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 14 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2