Plasmid CP101299.1

Sequence

Nucleotide Information

Accession CP101299.1
Description Escherichia coli strain 2006-3008 plasmid pCol-O103-3, complete sequence
Source insd
Topology circular
Length 6673 bp
GC Content 0.50 %
Created at NCBI July 18, 2022



Biosample

Curated Collection Information
Accession 24907328

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK




Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
AB000510.1non-mobilizableAD045AM462Candidatus Phytoplasma0.0
AB011548.2rep_cluster_2350MOBFMOB_unknownmobilizableAA667AI941Actinomycetota,Bacillota,Bacteroidota,Pseudomonadota0.0genus
AB011549.2IncFIA,IncFIBnon-mobilizableAA345AI296Enterobacterales0.0order
AB063523.1rep_cluster_1526non-mobilizableAE201AN929Wigglesworthia0.0
AB244976.1rep_cluster_1617MOBPMPF_TMOBQconjugativeAC441AL633Sphingomonadaceae0.00940624
AB576781.2IncFIIMOBFMPF_FconjugativeAB460AK247Enterobacterales0.0family
AB605179.1IncFIB,IncFIIMOBFMPF_FconjugativeAB460AK247Enterobacterales0.0order
ADWM02000138.1non-mobilizableAF844AP846Neisseria0.00058191
ADWN02000004.1non-mobilizableAF844AP846Neisseria0.00058191
AE006471.2IncFIB,IncFIIMOBFMPF_FconjugativeAB460AK247Enterobacterales0.0order
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Showing 1 to 10 of 72,360 entries (filtered from 72,556 total entries)
…




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNC_005019MOBP65076592plus1001003.03e-37159
repliconCP039864_00003rep_cluster_240158616046plus96.774982.18e-82311
relaxaseNC_023328_00003MOBP5762171plus98.8721000991
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
No matching records found
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Showing 0 to 0 of 0 entries (filtered from 60,619 total entries)