Plasmid CP099277.1
Sequence
Nucleotide Information
| Accession | CP099277.1 |
|---|---|
| Description | Escherichia coli strain RHB05-SO-C07 plasmid unnamed2, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 3906 bp |
| GC Content | 0.51 % |
| Created at NCBI | April 13, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15488508 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | United Kingdom |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 54.70/-3.28 |
| Address | United Kingdom |
ECOSYSTEM
| Original Query | culture,Pooled soil sample collected from floor of sheep farm |
|---|---|
| Classification | anthropogenic,cell_culture,farm,soil |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | MobA/MobL family protein | copy | ||
| PGAG | conjugal transfer protein TraD | copy | ||
| PGAG | replication initiation protein | copy | ||
| MOB-typer | MOBQ | copy | ||
| MOB-typer | MOBQ | copy | ||
| MOB-typer | Col156 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 6 of 6 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_011093_00004 | MOBQ | 3 | 599 | minus | 98.492 | 99 | 7.48e-131 | 417 |
| relaxase | NC_013719_00001 | MOBQ | 2958 | 3905 | minus | 90.252 | 99 | 7.72e-164 | 504 |
| replicon | CP001126_00001 | Col156 | 1722 | 2497 | minus | 96.778 | 83 | 0 | 1295 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |