Plasmid CP099060.1

Sequence

Nucleotide Information

Accession CP099060.1
Description Escherichia coli strain RHB43-SO-C04 plasmid unnamed1, complete sequence
Source insd
Topology circular
Length 124283 bp
GC Content 0.49 %
Created at NCBI April 13, 2023



Assembly

Genome Data Information

Accession GCA_029720045.1
Assembly Coverage 152


Biosample

Curated Collection Information
Accession 15488654

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled soil sample collected from floor of poultry farm
Classification anthropogenic,cell_culture,farm,soil
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP099063.1 See Comparison
CP099066.1 See Comparison
CP099069.1 See Comparison
CP099073.1 See Comparison
CP099076.1 See Comparison
CP099090.1 See Comparison
CP099093.1 See Comparison
CP099096.1 See Comparison
CP099063.1 See Comparison
CP099063.1 See Comparison
CP099066.1 See Comparison
CP099069.1 See Comparison
CP099073.1 See Comparison
CP099076.1 See Comparison
CP099090.1 See Comparison
CP099093.1 See Comparison
CP099096.1 See Comparison
CP099066.1 See Comparison
CP099069.1 See Comparison
CP099073.1 See Comparison
CP099076.1 See Comparison
CP099090.1 See Comparison
CP099093.1 See Comparison
CP099096.1 See Comparison
CP099063.1 See Comparison
CP099060.1 See Comparison
CP099063.1 See Comparison
CP099066.1 See Comparison
CP099069.1 See Comparison
CP099073.1 See Comparison
CP099076.1 See Comparison
CP099090.1 See Comparison
CP099093.1 See Comparison
CP099096.1 See Comparison
CP099066.1 See Comparison
CP099069.1 See Comparison
CP099073.1 See Comparison
CP099076.1 See Comparison
CP099090.1 See Comparison
CP099093.1 See Comparison
CP099096.1 See Comparison
CP099063.1 See Comparison
CP099066.1 See Comparison
CP099069.1 See Comparison
CP099073.1 See Comparison
CP099076.1 See Comparison
CP099090.1 See Comparison
CP099093.1 See Comparison
CP099096.1 See Comparison
CP099063.1 See Comparison
CP099066.1 See Comparison
CP099069.1 See Comparison
CP099073.1 See Comparison
CP099076.1 See Comparison
CP099090.1 See Comparison
CP099093.1 See Comparison
CP099096.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRepB family plasmid replication initiator proteincopy
PGAGsite-specific integrasecopy
PGAGtranscriptional regulatorcopy
PGAGtype 1 fimbrial proteincopy
PGAGmolecular chaperonecopy
PGAGfimbria/pilus periplasmic chaperonecopy
PGAGfimbrial biogenesis outer membrane usher proteincopy
PGAGfimbria/pilus periplasmic chaperonecopy
PGAGfimbrial proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 145 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_017627_00068MOBF99743105010plus96.41210003314
mate-pair-formationNC_019094_00090MPF_F1642217816minus95.708960811
mate-pair-formationNC_010409_00124MPF_F1781918544minus98.761004.19e-156486
mate-pair-formationNC_019037_00043MPF_F1876519097minus97.297921.12e-57198
mate-pair-formationNC_022651_00077MPF_F1912219430minus100994.03e-63213
mate-pair-formationNC_022651_00077MPF_F7215472462plus100994.03e-63213
mate-pair-formationNC_010409_00124MPF_F7304073765plus98.761004.19e-156486
mate-pair-formationNC_019094_00090MPF_F7376875162plus95.708960811
mate-pair-formationNC_017639_00094MPF_F7607676588plus98.2461001.3e-97315
mate-pair-formationNC_013437_00116MPF_T7823980854plus91.6289901649
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 21 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2