Plasmid CP098948.1

Sequence

Nucleotide Information

Accession CP098948.1
Description Escherichia coli strain RHB47-C06 plasmid unnamed1, complete sequence
Source insd
Topology circular
Length 145909 bp
GC Content 0.50 %
Created at NCBI April 13, 2023



Assembly

Genome Data Information

Accession GCA_029721075.1
Assembly Coverage 77


Biosample

Curated Collection Information
Accession 15488720

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled faeces sample collected from floor of poultry farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP098948.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRepB family plasmid replication initiator proteincopy
PGAGsite-specific integrasecopy
PGAGserine/threonine protein kinasecopy
PGAGhypothetical proteincopy
PGAGRNA-directed DNA polymerasecopy
PGAGasrCcopy
PGAGasrBcopy
PGAGasrAcopy
PGAGtype 1 fimbrial proteincopy
PGAGmolecular chaperonecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 160 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_011413_00081MOBF5156856781minus95.85710003280
mate-pair-formationNC_011413_00080MPF_T5678458967minus94.09310001322
mate-pair-formationNC_011413_00075MPF_F6181764723minus97.1110001884
mate-pair-formationNC_011413_00074MPF_F6472666129minus99.7861000920
mate-pair-formationNC_011413_00069MPF_F6894970880minus99.84510001226
mate-pair-formationNC_011413_00068MPF_F7088071482minus99.5021005.799999999999999e-131412
mate-pair-formationNC_011413_00064MPF_F7288273877minus99.6991000691
mate-pair-formationNC_011413_00063MPF_F7387774491minus99.0241004.3e-132415
mate-pair-formationNC_011413_00060MPF_T7511377749minus99.88610001794
mate-pair-formationNC_011413_00059MPF_F7774978279minus1001002.3e-82271
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2