Plasmid CP094900.1

Sequence

Nucleotide Information

Accession CP094900.1
Description Klebsiella pneumoniae strain 2017HL-00503 plasmid Kpn-WC17-007-03, complete sequence
Source insd
Topology circular
Length 74544 bp
GC Content 0.53 %
Created at NCBI April 1, 2022



Assembly

Genome Data Information

Accession GCA_022035255.2
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 16916268

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,whole organism
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP094900.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaTEM-1copy
amrfinderplusblaKPC-3copy
PGAGreplication protein RepAcopy
PGAGTn3-like element Tn5403 family transposasecopy
PGAGrecombinase family proteincopy
PGAGconjugal transfer protein TrbCcopy
PGAGDsbC family proteincopy
PGAGconjugal transfer protein TrbAcopy
PGAGlytic transglycosylase domain-containing proteincopy
PGAGDUF1496 domain-containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 95 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_004464_00056MOBP5160253578plus99.39310001373
mate-pair-formationNC_004464_00105MPF_I61018185minus99.42410001407
mate-pair-formationNC_005246_00057MPF_I5413454868plus99.592952.02e-162505
mate-pair-formationNC_019063_00094MPF_I5959160100plus99.4121001.74e-108346
mate-pair-formationNC_019344_00078MPF_I6076661476plus98.7341005.1300000000000006e-129408
mate-pair-formationNC_004464_00066MPF_I6148862636plus99.4781000646
mate-pair-formationNC_004464_00068MPF_I6401264713plus94.4441001.39e-127404
mate-pair-formationNC_019154_00069MPF_I6474065267plus1001008.720000000000001e-100321
mate-pair-formationNC_005246_00069MPF_I6528765673plus1001002.86e-65220
mate-pair-formationNC_004464_00073MPF_I6926070465plus99.7511000781
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2