Plasmid CP093137.1

Sequence

Nucleotide Information

Accession CP093137.1
Description Salmonella enterica strain PNUSAS127695 plasmid pPNUSAS127695_2, complete sequence
Source insd
Topology circular
Length 4659 bp
GC Content 0.52 %
Created at NCBI March 7, 2022



Assembly

Genome Data Information

Accession GCA_016231065.2
Assembly Coverage 62


Biosample

Curated Collection Information
Accession 13795856

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGMobC family plasmid mobilization relaxosome proteincopy
PGAGMbeB family mobilization proteincopy
PGAGMbeD family mobilization/exclusion proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
MOB-typerMOB_unknowncopy
MOB-typerrep_cluster_2358copy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 9 of 9 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP016722MOB_unknown281465plus85.561862.7100000000000003e-47195
repliconCP000974_00005rep_cluster_235842914659minus86.528948.43e-111407
relaxaseNC_013090_00004MOBP8822378plus91.7841000885
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2