Plasmid CP088830.1

Sequence

Nucleotide Information

Accession CP088830.1
Description Escherichia coli strain A17EC0026 plasmid pA17EC0026-2, complete sequence
Source insd
Topology circular
Length 107833 bp
GC Content 0.52 %
Created at NCBI Dec. 9, 2021



Assembly

Genome Data Information

Accession GCF_021133295.1
Assembly Coverage 194


Biosample

Curated Collection Information
Accession 23391550

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.57N;126.98E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.57/126.98
Address Korea Trade Insurance Corporation, 14, 종로 자전거 전용로, Jongno 1-ga, Jongno 1·2·3·4(ilisamsa)-ga-dong, Jongno-gu, Seoul, 03188, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP088853.1 See Comparison
CP088841.1 See Comparison
CP088780.1 See Comparison
CP088724.1 See Comparison
CP088638.1 See Comparison
CP088561.1 See Comparison
CP088527.1 See Comparison
CP088552.1 See Comparison
CP088510.1 See Comparison
CP088484.1 See Comparison
CP088464.1 See Comparison
CP088380.1 See Comparison
CP088353.1 See Comparison
CP088345.1 See Comparison
NZ_CP135220.1 See Comparison
CP088853.1 See Comparison
CP088886.1 See Comparison
CP088638.1 See Comparison
CP088561.1 See Comparison
CP088527.1 See Comparison
CP088552.1 See Comparison
CP088510.1 See Comparison
CP088484.1 See Comparison
CP088464.1 See Comparison
CP088380.1 See Comparison
CP088353.1 See Comparison
CP088345.1 See Comparison
NZ_CP135220.1 See Comparison
CP088853.1 See Comparison
CP088841.1 See Comparison
CP088780.1 See Comparison
CP088724.1 See Comparison
CP088886.1 See Comparison
CP088552.1 See Comparison
CP088510.1 See Comparison
CP088484.1 See Comparison
CP088464.1 See Comparison
CP088380.1 See Comparison
CP088353.1 See Comparison
CP088345.1 See Comparison
CP088841.1 See Comparison
CP088780.1 See Comparison
CP088724.1 See Comparison
CP088638.1 See Comparison
CP088561.1 See Comparison
CP088527.1 See Comparison
NZ_CP135220.1 See Comparison
NZ_CP135220.1 See Comparison
CP088853.1 See Comparison
CP088841.1 See Comparison
CP088830.1 See Comparison
CP088780.1 See Comparison
CP088724.1 See Comparison
CP088638.1 See Comparison
CP088561.1 See Comparison
CP088527.1 See Comparison
CP088552.1 See Comparison
CP088510.1 See Comparison
CP088484.1 See Comparison
CP088464.1 See Comparison
CP088380.1 See Comparison
CP088353.1 See Comparison
CP088345.1 See Comparison
CP088886.1 See Comparison
CP088853.1 See Comparison
CP088841.1 See Comparison
CP088780.1 See Comparison
CP088724.1 See Comparison
CP088638.1 See Comparison
CP088561.1 See Comparison
CP088527.1 See Comparison
CP088552.1 See Comparison
CP088510.1 See Comparison
CP088484.1 See Comparison
CP088464.1 See Comparison
CP088380.1 See Comparison
CP088353.1 See Comparison
CP088345.1 See Comparison
CP088886.1 See Comparison
NZ_CP135220.1 See Comparison
CP088886.1 See Comparison
CP088886.1 See Comparison
CP088853.1 See Comparison
CP088841.1 See Comparison
CP088780.1 See Comparison
CP088724.1 See Comparison
CP088638.1 See Comparison
CP088561.1 See Comparison
CP088527.1 See Comparison
CP088552.1 See Comparison
CP088510.1 See Comparison
CP088484.1 See Comparison
CP088464.1 See Comparison
CP088380.1 See Comparison
CP088353.1 See Comparison
CP088345.1 See Comparison
NZ_CP135220.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore