Plasmid CP082903.1

Sequence

Nucleotide Information

Accession CP082903.1
Description Salmonella enterica subsp. enterica serovar Cerro strain FSIS1607502 plasmid pF18S016-qnr, complete sequence
Source insd
Topology circular
Length 7621 bp
GC Content 0.60 %
Created at NCBI Sept. 13, 2021



Assembly

Genome Data Information

Accession GCA_019931615.1
Assembly Coverage 99


Biosample

Curated Collection Information
Accession 5726933

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,SC
Original Query Type name
Coordinates (Lat/Lon) 33.69/-80.44
Address USA,SC

ECOSYSTEM
Original Query animal-chicken-young chicken
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP145805.1 See Comparison
MF554638.1 See Comparison
NC_011207.1 See Comparison
NZ_CP145807.1 See Comparison
NZ_KU644676.1 See Comparison
NZ_KT896500.1 See Comparison
NZ_MK962693.1 See Comparison
NZ_KM245123.1 See Comparison
NZ_KT896499.1 See Comparison
NZ_KT896501.1 See Comparison
NZ_KT896503.1 See Comparison
NZ_CP145805.1 See Comparison
NZ_CP064665.1 See Comparison
NZ_CP064662.1 See Comparison
NZ_CP064668.1 See Comparison
NC_011207.1 See Comparison
MF554638.1 See Comparison
CP082903.1 See Comparison
NZ_CP145807.1 See Comparison
NZ_KT896499.1 See Comparison
NZ_KU644676.1 See Comparison
NZ_KT896500.1 See Comparison
NZ_KM245123.1 See Comparison
NZ_KT896501.1 See Comparison
NZ_KT896503.1 See Comparison
NZ_KT896499.1 See Comparison
NZ_MK962693.1 See Comparison
NZ_CP064665.1 See Comparison
NZ_CP064662.1 See Comparison
NZ_CP064668.1 See Comparison
NC_011207.1 See Comparison
MF554638.1 See Comparison
NZ_KT896500.1 See Comparison
NZ_CP145805.1 See Comparison
NZ_CP145807.1 See Comparison
NZ_KU644676.1 See Comparison
NZ_KM245123.1 See Comparison
NZ_KT896501.1 See Comparison
NZ_KT896503.1 See Comparison
NZ_MK962693.1 See Comparison
MF554638.1 See Comparison
NZ_CP064665.1 See Comparison
NZ_CP064662.1 See Comparison
NZ_CP064668.1 See Comparison
NC_011207.1 See Comparison
NZ_KT896500.1 See Comparison
NZ_CP145805.1 See Comparison
NZ_CP145807.1 See Comparison
NC_011207.1 See Comparison
NZ_KT896499.1 See Comparison
NZ_KT896501.1 See Comparison
NZ_KT896503.1 See Comparison
NZ_MK962693.1 See Comparison
NZ_KU644676.1 See Comparison
NZ_KM245123.1 See Comparison
NZ_CP064665.1 See Comparison
NZ_CP064662.1 See Comparison
NZ_CP064668.1 See Comparison
NZ_CP145805.1 See Comparison
MF554638.1 See Comparison
NZ_CP145807.1 See Comparison
NZ_KT896499.1 See Comparison
NZ_KT896500.1 See Comparison
NZ_KU644676.1 See Comparison
NZ_KM245123.1 See Comparison
NZ_KT896501.1 See Comparison
NZ_KT896503.1 See Comparison
NZ_MK962693.1 See Comparison
MF554638.1 See Comparison
NZ_CP064665.1 See Comparison
NZ_CP064662.1 See Comparison
NZ_CP064668.1 See Comparison
NC_011207.1 See Comparison
NZ_MK962693.1 See Comparison
NZ_KT896499.1 See Comparison
NZ_KT896501.1 See Comparison
NZ_KT896503.1 See Comparison
NZ_KM245123.1 See Comparison
NZ_CP145805.1 See Comparison
NZ_CP145807.1 See Comparison
NZ_KU644676.1 See Comparison
NZ_KT896500.1 See Comparison
NZ_CP064665.1 See Comparison
NZ_CP064668.1 See Comparison
NZ_CP064662.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore