Plasmid CP082710.1

Sequence

Nucleotide Information

Accession	CP082710.1
Description	Salmonella enterica subsp. enterica serovar London strain CVM N17S367 plasmid pN17S367, complete sequence
Source	insd
Topology	circular
Length	113501 bp
GC Content	0.52 %
Created at NCBI	Sept. 2, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (149390)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCA_005549255.2
Assembly Coverage	990

Biosample

Curated Collection Information

Accession	10242831

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA,SC
Original Query Type	name
Coordinates (Lat/Lon)	33.69/-80.44
Address	USA,SC

ECOSYSTEM

Original Query	ground turkey
Classification	food,meat
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Similar Plasmids

based on Mash distance

NZ_CP140418.1	See Comparison
CP082378.1	See Comparison
CP082378.1	See Comparison
CP082378.1	See Comparison
NZ_CP140418.1	See Comparison
CP082378.1	See Comparison
NZ_CP140418.1	See Comparison
CP082378.1	See Comparison
NZ_CP140418.1	See Comparison
NZ_CP140418.1	See Comparison
CP082378.1	See Comparison
NZ_CP140418.1	See Comparison
CP082710.1	See Comparison
CP082378.1	See Comparison
NZ_CP140418.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	qacEdelta1		copy
amrfinderplus	sul1		copy
amrfinderplus	aac(3)-VIa		copy
amrfinderplus	blaHER-3		copy
amrfinderplus	aadA1		copy
rgi	aadA		copy
rgi	HERA-3		copy
PGAG	Hok/Gef family protein		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 135 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

oriT	DQ916413	MOBP	105457	105537	plus	100	100	1.67e-34	150
relaxase	NC_019097	MOBP	105896	108589	plus	95.212	99	0	1684
replicon	KT186369	IncI-gamma/K1	46276	47307	plus	100	100	0	1906
mate-pair-formation	NC_022267_00057	MPF_I	5591	6790	minus	99.25	100	0	769
mate-pair-formation	NC_019111_00038	MPF_I	11568	11945	minus	96.032	94	2.000000000000001e-45	164
mate-pair-formation	NC_023290_00086	MPF_I	11999	12523	minus	99.429	100	3.4400000000000003e-100	322
mate-pair-formation	NC_015965_00072	MPF_I	12526	13227	minus	99.573	100	4.56e-153	477
mate-pair-formation	NC_019097_00075	MPF_I	14522	15502	minus	99.694	100	0	656
mate-pair-formation	NC_022267_00069	MPF_I	15558	16205	minus	97.685	91	1.02e-140	442
mate-pair-formation	NZ_CM001473_00069	MPF_I	16205	16549	minus	91.379	100	1.6799999999999995e-54	189
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 10 of 12 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2