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v. 2024_05_31_v2
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Typing
Plasmid CP082628.1
Sequence
Nucleotide Information
Accession
CP082628.1
Description
Salmonella enterica subsp. enterica serovar Derby strain CVM N17S1441 plasmid pN17S1441, complete sequence
Source
insd
Topology
circular
Length
85883 bp
GC Content
0.50 %
Created at NCBI
Aug. 31, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (28144)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCA_005447225.2
Assembly Coverage
515
Biosample
Curated Collection Information
Accession
10133052
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA,PA
Original Query Type
name
Coordinates (Lat/Lon)
40.97/-77.73
Address
USA,PA
ECOSYSTEM
Original Query
Pork Chop
Classification
food,meat
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Similar Plasmids
based on Mash distance
NZ_CP117350.1
See Comparison
CP092313.1
See Comparison
CP092313.1
See Comparison
NZ_CP117350.1
See Comparison
NC_019131.1
See Comparison
NC_019131.1
See Comparison
NC_019131.1
See Comparison
NZ_CP117350.1
See Comparison
NC_019131.1
See Comparison
NZ_CP117350.1
See Comparison
CP092313.1
See Comparison
CP092313.1
See Comparison
CP082628.1
See Comparison
CP092313.1
See Comparison
NZ_CP117350.1
See Comparison
NZ_CP117350.1
See Comparison
NC_019131.1
See Comparison
CP092313.1
See Comparison
NC_019131.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore