Plasmid CP082419.1

Sequence

Nucleotide Information

Accession CP082419.1
Description Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS11704067 plasmid pF18S032-2, complete sequence
Source insd
Topology circular
Length 4593 bp
GC Content 0.50 %
Created at NCBI Sept. 2, 2021



Assembly

Genome Data Information

Accession GCA_007765475.2
Assembly Coverage 956


Biosample

Curated Collection Information
Accession 7608142

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,MN
Original Query Type name
Coordinates (Lat/Lon) 45.99/-94.61
Address USA,MN

ECOSYSTEM
Original Query animal-swine-market swine
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP092005.1 See Comparison
CP082633.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
CP056959.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP043668.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
CP082633.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP043668.1 See Comparison
CP056959.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
CP099157.1 See Comparison
NZ_CP092005.1 See Comparison
CP082633.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
CP056959.1 See Comparison
CP099163.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP039570.1 See Comparison
CP082633.1 See Comparison
CP082419.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP030004.1 See Comparison
CP056959.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP043668.1 See Comparison
CP082633.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP039570.1 See Comparison
CP056959.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP065133.1 See Comparison
CP099157.1 See Comparison
NZ_CP043668.1 See Comparison
CP099163.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP039570.1 See Comparison
CP082633.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
CP056959.1 See Comparison
NZ_CP043668.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore